BMRB: 34483

Constitutive decay element CDE1 from human 3'UTR

Authors

Schwalbe, H., Binas, O.

Assembly

RNA (5'-R(*GP*GP*UP*GP*CP*CP*UP*AP*AP*UP*AP*UP*UP*UP*AP*GP*GP*CP*AP*CP*C)-3')

Entity

1. RNA (5'-R(*GP*GP*UP*GP*CP*CP*UP*AP*AP*UP*AP*UP*UP*UP*AP*GP*GP*CP*AP*CP*C)-3') (polymer, Thiol state: not present), 19 monomers, 6072.556 Da Detail

GGAAAUUAUA UUAAUUUCC

Formula weight

6072.556 Da

Source organism

Thermosinus carboxydivorans Nor1

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chemcal Shifts

¹H: 135, ¹³C: 112 assignments Detail

Download

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• BMRB/XML (partial)
• CSV
• TSV

ID	Entity ID	Seq ID	Comp ID	Atom ID	Atom type	Val	Val err	Ambig. code
1	1	1	G	H1'	H	5.844	0.001
2	1	1	G	H3'	H	4.700	0.001
3	1	1	G	H4'	H	4.569	0.002
4	1	1	G	H5'	H	4.454	0.002
5	1	1	G	H5''	H	4.297	0.005
6	1	1	G	H8	H	8.139	0.002
7	1	1	G	C1'	C	91.840	0.039
8	1	1	G	C2'	C	75.177	0.000
9	1	1	G	C3'	C	74.587	0.000
10	1	1	G	C4'	C	83.264	0.000
11	1	1	G	C5'	C	67.283	0.016
12	1	1	G	C8	C	139.022	0.000
13	1	1	G	HO2'	H	4.947	0.003
14	1	2	G	H1'	H	5.915	0.003
15	1	2	G	H3'	H	4.582	0.004
16	1	2	G	H4'	H	4.569	0.012
17	1	2	G	H5'	H	4.503	0.000
18	1	2	G	H5''	H	4.261	0.000
19	1	2	G	H8	H	7.493	0.001
20	1	2	G	C1'	C	92.986	0.015
21	1	2	G	C2'	C	75.481	0.007
22	1	2	G	C3'	C	73.255	0.003
23	1	2	G	C4'	C	82.436	0.025
24	1	2	G	C5'	C	66.322	0.025
25	1	2	G	C8	C	136.865	0.000
26	1	2	G	HO2'	H	4.695	0.002
27	1	3	A	H1'	H	5.954	0.001
28	1	3	A	H2	H	7.146	0.002
29	1	3	A	H3'	H	4.676	0.002
30	1	3	A	H4'	H	4.534	0.004
31	1	3	A	H5'	H	4.608	0.001
32	1	3	A	H5''	H	4.173	0.001
33	1	3	A	H8	H	7.730	0.002
34	1	3	A	C1'	C	93.172	0.031
35	1	3	A	C2	C	152.873	0.000
36	1	3	A	C2'	C	75.767	0.007
37	1	3	A	C3'	C	72.941	0.017
38	1	3	A	C4'	C	82.174	0.012
39	1	3	A	C5'	C	65.160	0.004
40	1	3	A	C8	C	139.416	0.000
41	1	3	A	HO2'	H	4.675	0.000
42	1	4	A	H1'	H	5.813	0.001
43	1	4	A	H2	H	7.204	0.001
44	1	4	A	H3'	H	4.609	0.002
45	1	4	A	H4'	H	4.521	0.009
46	1	4	A	H8	H	7.608	0.001
47	1	4	A	C1'	C	92.856	0.027
48	1	4	A	C2	C	152.767	0.000
49	1	4	A	C2'	C	75.739	0.011
50	1	4	A	C3'	C	73.245	0.000
51	1	4	A	C4'	C	82.133	0.007
52	1	4	A	C8	C	139.234	0.000
53	1	4	A	HO2'	H	4.616	0.005
54	1	5	A	H1'	H	5.849	0.002
55	1	5	A	H2	H	7.763	0.000
56	1	5	A	H3'	H	4.505	0.002
57	1	5	A	H4'	H	4.508	0.001
58	1	5	A	H5'	H	4.530	0.000
59	1	5	A	H5''	H	4.109	0.000
60	1	5	A	H8	H	7.666	0.001
61	1	5	A	C1'	C	93.006	0.005
62	1	5	A	C2	C	153.695	0.000
63	1	5	A	C2'	C	75.561	0.008
64	1	5	A	C3'	C	73.004	0.024
65	1	5	A	C4'	C	82.223	0.015
66	1	5	A	C5'	C	65.539	0.005
67	1	5	A	C8	C	139.312	0.000
68	1	5	A	HO2'	H	4.459	0.003
69	1	6	U	H1'	H	5.463	0.002
70	1	6	U	H3'	H	4.398	0.003
71	1	6	U	H4'	H	4.406	0.000
72	1	6	U	H5	H	4.959	0.003
73	1	6	U	H6	H	7.536	0.003
74	1	6	U	C1'	C	93.541	0.023
75	1	6	U	C2'	C	75.456	0.031
76	1	6	U	C3'	C	72.360	0.000
77	1	6	U	C4'	C	82.130	0.000
78	1	6	U	C6	C	141.401	0.000
79	1	6	U	HO2'	H	4.288	0.002
80	1	7	U	H1'	H	5.617	0.008
81	1	7	U	H3'	H	4.530	0.003
82	1	7	U	H4'	H	4.459	0.028
83	1	7	U	H5	H	5.470	0.001
84	1	7	U	H5'	H	4.529	0.013
85	1	7	U	H5''	H	4.102	0.000
86	1	7	U	H6	H	7.804	0.003
87	1	7	U	C1'	C	93.506	0.025
88	1	7	U	C2'	C	75.528	0.004
89	1	7	U	C3'	C	72.865	0.000
90	1	7	U	C4'	C	82.328	0.058
91	1	7	U	C5'	C	64.973	0.036
92	1	7	U	C6	C	141.916	0.000
93	1	7	U	HO2'	H	4.334	0.001
94	1	8	A	H1'	H	5.889	0.006
95	1	8	A	H2	H	7.192	0.001
96	1	8	A	H3'	H	4.693	0.003
97	1	8	A	H4'	H	4.492	0.001
98	1	8	A	H5'	H	4.450	0.004
99	1	8	A	H5''	H	4.132	0.003
100	1	8	A	H8	H	8.082	0.001
101	1	8	A	C1'	C	91.377	0.009
102	1	8	A	C2	C	153.961	0.000
103	1	8	A	C2'	C	76.353	0.016
104	1	8	A	C3'	C	75.171	0.014
105	1	8	A	C4'	C	83.684	0.010
106	1	8	A	C5'	C	66.190	0.014
107	1	8	A	C8	C	140.304	0.000
108	1	8	A	HO2'	H	4.515	0.004
109	1	9	U	H1'	H	5.631	0.001
110	1	9	U	H3'	H	4.453	0.001
111	1	9	U	H4'	H	4.243	0.003
112	1	9	U	H5	H	5.636	0.000
113	1	9	U	H5'	H	4.105	0.004
114	1	9	U	H5''	H	3.992	0.001
115	1	9	U	H6	H	7.642	0.002
116	1	9	U	C1'	C	90.618	0.008
117	1	9	U	C2'	C	75.682	0.052
118	1	9	U	C3'	C	76.902	0.016
119	1	9	U	C4'	C	85.125	0.001
120	1	9	U	C5'	C	67.349	0.014
121	1	9	U	C6	C	143.238	0.000
122	1	9	U	HO2'	H	4.276	0.003
123	1	10	A	H1'	H	5.748	0.002
124	1	10	A	H2	H	7.976	0.002
125	1	10	A	H3'	H	4.628	0.005
126	1	10	A	H4'	H	4.399	0.002
127	1	10	A	H5'	H	4.117	0.006
128	1	10	A	H5''	H	3.998	0.002
129	1	10	A	H8	H	7.995	0.001
130	1	10	A	C1'	C	90.082	0.003
131	1	10	A	C2	C	154.861	0.000
132	1	10	A	C2'	C	77.412	0.041
133	1	10	A	C3'	C	78.103	0.047
134	1	10	A	C4'	C	86.172	0.015
135	1	10	A	C5'	C	67.905	0.019
136	1	10	A	C8	C	141.696	0.000
137	1	10	A	HO2'	H	4.523	0.003
138	1	11	U	H1'	H	5.908	0.004
139	1	11	U	H3'	H	4.691	0.005
140	1	11	U	H4'	H	4.437	0.005
141	1	11	U	H5	H	5.781	0.000
142	1	11	U	H5'	H	4.129	0.001
143	1	11	U	H5''	H	4.081	0.004
144	1	11	U	H6	H	7.738	0.003
145	1	11	U	C1'	C	90.430	0.021
146	1	11	U	C2'	C	75.707	0.058
147	1	11	U	C3'	C	76.995	0.025
148	1	11	U	C4'	C	85.217	0.040
149	1	11	U	C5'	C	68.014	0.035
150	1	11	U	C6	C	143.823	0.000
151	1	11	U	HO2'	H	4.374	0.001
152	1	12	U	H1'	H	5.873	0.001
153	1	12	U	H3'	H	4.633	0.002
154	1	12	U	H4'	H	4.527	0.001
155	1	12	U	H5	H	5.918	0.003
156	1	12	U	H5'	H	4.258	0.001
157	1	12	U	H5''	H	4.227	0.002
158	1	12	U	H6	H	7.913	0.003
159	1	12	U	C1'	C	91.254	0.041
160	1	12	U	C2'	C	75.055	0.057
161	1	12	U	C3'	C	76.309	0.003
162	1	12	U	C4'	C	84.542	0.002
163	1	12	U	C5'	C	68.475	0.012
164	1	12	U	C6	C	143.797	0.000
165	1	12	U	HO2'	H	4.591	0.002
166	1	13	A	H1'	H	6.005	0.001
167	1	13	A	H2	H	6.811	0.001
168	1	13	A	H3'	H	4.681	0.002
169	1	13	A	H4'	H	4.619	0.005
170	1	13	A	H5'	H	4.448	0.003
171	1	13	A	H5''	H	4.379	0.002
172	1	13	A	H8	H	8.319	0.001
173	1	13	A	C1'	C	92.374	0.050
174	1	13	A	C2	C	152.440	0.000
175	1	13	A	C2'	C	75.434	0.019
176	1	13	A	C3'	C	74.569	0.029
177	1	13	A	C4'	C	83.268	0.003
178	1	13	A	C5'	C	67.678	0.004
179	1	13	A	C8	C	141.101	0.000
180	1	13	A	HO2'	H	4.750	0.005
181	1	14	A	H1'	H	5.914	0.002
182	1	14	A	H2	H	7.717	0.001
183	1	14	A	H3'	H	4.548	0.003
184	1	14	A	H8	H	7.865	0.000
185	1	14	A	C1'	C	92.859	0.000
186	1	14	A	C2	C	153.704	0.000
187	1	14	A	C2'	C	75.587	0.000
188	1	14	A	C3'	C	73.082	0.000
189	1	14	A	C8	C	139.657	0.000
190	1	14	A	HO2'	H	4.457	0.002
191	1	15	U	H1'	H	5.468	0.005
192	1	15	U	H3'	H	4.414	0.003
193	1	15	U	H5	H	5.001	0.001
194	1	15	U	H6	H	7.561	0.003
195	1	15	U	C1'	C	93.382	0.058
196	1	15	U	C2'	C	75.426	0.000
197	1	15	U	C3'	C	72.412	0.000
198	1	15	U	C6	C	141.395	0.000
199	1	15	U	HO2'	H	4.350	0.002
200	1	16	U	H1'	H	5.645	0.005
201	1	16	U	H3'	H	4.474	0.002
202	1	16	U	H5	H	5.518	0.001
203	1	16	U	H6	H	7.911	0.004
204	1	16	U	C1'	C	93.837	0.022
205	1	16	U	C2'	C	75.533	0.015
206	1	16	U	C3'	C	72.758	0.012
207	1	16	U	C6	C	142.348	0.000
208	1	16	U	HO2'	H	4.447	0.003
209	1	17	U	H1'	H	5.599	0.003
210	1	17	U	H3'	H	4.471	0.005
211	1	17	U	H4'	H	4.473	0.000
212	1	17	U	H5	H	5.560	0.000
213	1	17	U	H6	H	7.978	0.004
214	1	17	U	C1'	C	93.873	0.019
215	1	17	U	C2'	C	75.310	0.005
216	1	17	U	C3'	C	72.519	0.009
217	1	17	U	C4'	C	82.195	0.000
218	1	17	U	C6	C	142.596	0.000
219	1	17	U	HO2'	H	4.434	0.002
220	1	18	C	H1'	H	5.517	0.003
221	1	18	C	H3'	H	4.456	0.007
222	1	18	C	H4'	H	4.382	0.003
223	1	18	C	H5	H	5.620	0.000
224	1	18	C	H5'	H	4.533	0.000
225	1	18	C	H5''	H	4.062	0.000
226	1	18	C	H6	H	7.847	0.004
227	1	18	C	C1'	C	94.591	0.026
228	1	18	C	C2'	C	75.675	0.019
229	1	18	C	C3'	C	72.337	0.006
230	1	18	C	C4'	C	82.148	0.009
231	1	18	C	C5'	C	64.596	0.031
232	1	18	C	C6	C	141.967	0.000
233	1	18	C	HO2'	H	4.130	0.002
234	1	19	C	H1'	H	6.052	0.002
235	1	19	C	H3'	H	4.932	0.007
236	1	19	C	H4'	H	4.397	0.002
237	1	19	C	H5	H	5.479	0.000
238	1	19	C	H5'	H	4.522	0.003
239	1	19	C	H5''	H	4.083	0.004
240	1	19	C	H6	H	7.457	0.004
241	1	19	C	C1'	C	91.959	0.021
242	1	19	C	C2'	C	85.135	0.020
243	1	19	C	C3'	C	77.986	0.023
244	1	19	C	C4'	C	85.551	0.013
245	1	19	C	C5'	C	65.810	0.017
246	1	19	C	C6	C	141.852	0.000
247	1	19	C	HO2'	H	4.605	0.001

Release date

2020-05-21

Citation

Structural basis for the recognition of transiently structured AU-rich elements by Roquin
Niessing, D., Schwalbe, H., Weigand, J.E., Schlundt, A., Binas, O., Tants, J.N., Peter, S., Janowski, R., Davydova, E., Braun, J.
Nucleic Acids Res. (2020), 48, 7385-7403, PubMed 32491174 , DOI 10.1093/nar/gkaa465 , Abstract

Related entities 1. RNA (5'-R(*GP*GP*UP*GP*CP*CP*UP*AP*AP*UP*AP*UP*UP*UP*AP*GP*GP*CP*AP*CP*C)-3'), : 1 : 2 entities Detail

Experiments performed 8 experiments Detail

Chemical shift validation 3 contents Detail