BMRBj - BMREntryMaster

Found 1 Document (0.664 seconds)

BMRB: 34621

7OFO

NMR structure of the Bak transmembrane helix in DPC micelles

Authors

Sperl, L.E., Hagn, F.

Assembly

Bcl-2 homologous antagonist/killer

Entity

1. Bcl-2 homologous antagonist/killer (polymer, Thiol state: not present), 30 monomers, 3241.910 Da Detail

SLGNGPILNV LVVLGVVLLG QFVVRRFFKS

Formula weight

3241.91 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Data set

assigned_chemical_shifts, spectral_peak_list

Chem. Shift Complete

Sequence coverage: 86.7 %, Completeness: 31.1 %, Completeness (bb): 58.4 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	31.1 % (114 of 366)	18.3 % (34 of 186)	37.7 % (55 of 146)	73.5 % (25 of 34)
Backbone	58.4 % (104 of 178)	42.9 % (27 of 63)	60.5 % (52 of 86)	86.2 % (25 of 29)
Sidechain	5.6 % (12 of 214)	5.7 % (7 of 123)	5.8 % (5 of 86)	0.0 % (0 of 5)
Aromatic	0.0 % (0 of 30)	0.0 % (0 of 15)	0.0 % (0 of 15)
Methyl	7.1 % (4 of 56)	7.1 % (2 of 28)	7.1 % (2 of 28)

1. entity 1

SLGNGPILNV LVVLGVVLLG QFVVRRFFKS

Show sample condition

Sample

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 310 K, pH 7.0, Details 400 uM [U-13C; U-15N; U-2H] Bak-TMH, 20 mM sodium phosphate, 50 mM sodium chloride, 0.5 mM EDTA, 5 mM DTT, 300 mM DPC, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	Bak-TMH	[U-13C; U-15N; U-2H]	400 uM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	EDTA	natural abundance	0.5 mM
5	DTT	natural abundance	5 mM
6	DPC	natural abundance	300 mM

Release date

2021-06-10

Citation

High-resolution analysis of the conformational transition of pro-apoptotic Bak at the lipid membrane
Sperl, L.E., Ruhrnossl, F., Schiller, A., Haslbeck, M., Hagn, F.
EMBO J. (2021), 40, e107159-e107159, PubMed 34523144 , DOI 10.15252/embj.2020107159 , Abstract

Related entities 1. Bcl-2 homologous antagonist/killer, : 1 : 1 : 2 : 4 entities Detail

Interaction partners 1. Bcl-2 homologous antagonist/killer, : 43 interactors Detail

More details for 43 interactors identified by 20 citations

Experiments performed 4 experiments Detail

1 2D 1H-15N HSQC

Instrument

Bruker AVANCE III - 800 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 310 K, pH 7.0, Details 400 uM [U-13C; U-15N; U-2H] Bak-TMH, 20 mM sodium phosphate, 50 mM sodium chloride, 0.5 mM EDTA, 5 mM DTT, 300 mM DPC, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	Bak-TMH	[U-13C; U-15N; U-2H]	400 uM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	EDTA	natural abundance	0.5 mM
5	DTT	natural abundance	5 mM
6	DPC	natural abundance	300 mM

2 3D HNCO

Instrument

Bruker AVANCE III - 800 MHz

Sample

#	Name	Isotope labeling	Concentration
1	Bak-TMH	[U-13C; U-15N; U-2H]	400 uM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	EDTA	natural abundance	0.5 mM
5	DTT	natural abundance	5 mM
6	DPC	natural abundance	300 mM

3 3D HNCA

Instrument

Bruker AVANCE III - 800 MHz

Sample

#	Name	Isotope labeling	Concentration
1	Bak-TMH	[U-13C; U-15N; U-2H]	400 uM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	EDTA	natural abundance	0.5 mM
5	DTT	natural abundance	5 mM
6	DPC	natural abundance	300 mM

4 3D 1H-15N NOESY

Instrument

Bruker AVANCE III - 800 MHz

Sample

#	Name	Isotope labeling	Concentration
1	Bak-TMH	[U-13C; U-15N; U-2H]	400 uM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	EDTA	natural abundance	0.5 mM
5	DTT	natural abundance	5 mM
6	DPC	natural abundance	300 mM

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr34621_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	OK

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr34621_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	OK	97		83.3 (chain: 1, length: 30)
1	Chemical shift references	chem_shift_reference_1	OK	3		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: OK
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 30, Sequence coverage: 83.3%
- Total number of assignments
  - ¹³C chemical shifts: 49
  - ¹H chemical shifts: 24
  - ¹⁵N chemical shifts: 24
- Completeness of assignments
  - Entity_assemble_ID: 1
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	146	49	33.6
¹H chemical shifts	186	24	12.9
¹⁵N chemical shifts	34	24	70.6

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	60	49	81.7
¹H chemical shifts	63	24	38.1
¹⁵N chemical shifts	29	24	82.8

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	86	0	0.0
¹H chemical shifts	123	0	0.0
¹⁵N chemical shifts	5	0	0.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	28	0	0.0
¹H chemical shifts	28	0	0.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	15	0	0.0
¹H chemical shifts	15	0	0.0

Keywords APOPTOSIS, Bcl2 proteins, mitochondria, pore formation

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Found 1 Document (0.664 seconds)

BMRB: 34621

Sample

Related entities 1. Bcl-2 homologous antagonist/killer, : 1 : 1 : 2 : 4 entities Detail

Interaction partners 1. Bcl-2 homologous antagonist/killer, : 43 interactors Detail

Experiments performed 4 experiments Detail

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Chemical shift validation 3 contents Detail