BMRBj - BMREntryMaster

Found 1 Document (0.373 seconds)

BMRB: 34627

Solution structure of Legionella pneumophila LspC

Authors

Portlock, T.J., Garnett, J.A.

Assembly

General secretion pathway protein C

Entity

1. General secretion pathway protein C (polymer, Thiol state: not present), 144 monomers, 15973.93 Da Detail

MAHHHHHHVD DDDKMTYVRA IPVSNTKSIA GMREENLNYI FNTSLFGVYV PADLNEDNVK QSMLNVTLVG ILFADKIEES QVIIRSASGE EKTYNVGDKI PGGATIKRIM PGGVLVERDG TLESLSLPKN DLTFEPVAKP LKEE

Formula weight

15973.93 Da

Source organism

Legionella pneumophila

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 92.4 %, Completeness: 80.2 %, Completeness (bb): 86.7 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	80.2 % (1329 of 1657)	79.3 % (679 of 856)	82.1 % (532 of 648)	77.1 % (118 of 153)
Backbone	86.7 % (737 of 850)	83.8 % (244 of 291)	88.9 % (375 of 422)	86.1 % (118 of 137)
Sidechain	75.6 % (711 of 941)	76.8 % (434 of 565)	76.9 % (277 of 360)	0.0 % (0 of 16)
Aromatic	35.4 % (34 of 96)	66.7 % (32 of 48)	4.2 % (2 of 48)
Methyl	93.0 % (160 of 172)	94.2 % (81 of 86)	91.9 % (79 of 86)

1. entity 1

MAHHHHHHVD DDDKMTYVRA IPVSNTKSIA GMREENLNYI FNTSLFGVYV PADLNEDNVK QSMLNVTLVG ILFADKIEES QVIIRSASGE EKTYNVGDKI PGGATIKRIM PGGVLVERDG TLESLSLPKN DLTFEPVAKP LKEE

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7.0, Details 0.4 mM [U-99% 13C; U-99% 15N] LspC-PER, 50 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	LspC-PER	[U-99% 13C; U-99% 15N]	0.4 mM
2	sodium phosphate	natural abundance	50 mM
3	sodium chloride	natural abundance	50 mM

Release date

2021-05-31

Citation

Solution structure of Legionella pneumophila LspC
Portlock, T.J., Garnett, J.A.

Related entities 1. General secretion pathway protein C, : 2 entities Detail

Experiments performed 11 experiments Detail

1 2D 1H-15N HSQC

Instrument

Bruker AVANCE - 700 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7.0, Details 0.4 mM [U-99% 13C; U-99% 15N] LspC-PER, 50 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	LspC-PER	[U-99% 13C; U-99% 15N]	0.4 mM
2	sodium phosphate	natural abundance	50 mM
3	sodium chloride	natural abundance	50 mM

2 3D CBCA(CO)NH

Instrument

Bruker AVANCE - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
1	LspC-PER	[U-99% 13C; U-99% 15N]	0.4 mM
2	sodium phosphate	natural abundance	50 mM
3	sodium chloride	natural abundance	50 mM

3 3D HNCO

Instrument

Bruker AVANCE - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
1	LspC-PER	[U-99% 13C; U-99% 15N]	0.4 mM
2	sodium phosphate	natural abundance	50 mM
3	sodium chloride	natural abundance	50 mM

4 3D HCCH-TOCSY

Instrument

Bruker AVANCE - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
1	LspC-PER	[U-99% 13C; U-99% 15N]	0.4 mM
2	sodium phosphate	natural abundance	50 mM
3	sodium chloride	natural abundance	50 mM

5 3D CCH-TOCSY

Instrument

Bruker AVANCE - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
1	LspC-PER	[U-99% 13C; U-99% 15N]	0.4 mM
2	sodium phosphate	natural abundance	50 mM
3	sodium chloride	natural abundance	50 mM

6 3D HNCA

Instrument

Bruker AVANCE - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
1	LspC-PER	[U-99% 13C; U-99% 15N]	0.4 mM
2	sodium phosphate	natural abundance	50 mM
3	sodium chloride	natural abundance	50 mM

7 3D HN(CO)CA

Instrument

Bruker AVANCE - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
1	LspC-PER	[U-99% 13C; U-99% 15N]	0.4 mM
2	sodium phosphate	natural abundance	50 mM
3	sodium chloride	natural abundance	50 mM

8 3D HNCACB

Instrument

Bruker AVANCE - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
1	LspC-PER	[U-99% 13C; U-99% 15N]	0.4 mM
2	sodium phosphate	natural abundance	50 mM
3	sodium chloride	natural abundance	50 mM

9 3D 1H-13C NOESY

Instrument

Bruker AVANCE - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
1	LspC-PER	[U-99% 13C; U-99% 15N]	0.4 mM
2	sodium phosphate	natural abundance	50 mM
3	sodium chloride	natural abundance	50 mM

10 3D 1H-15N NOESY

Instrument

Bruker AVANCE - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
1	LspC-PER	[U-99% 13C; U-99% 15N]	0.4 mM
2	sodium phosphate	natural abundance	50 mM
3	sodium chloride	natural abundance	50 mM

11 2D 1H-13C HSQC

Instrument

Bruker AVANCE - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
1	LspC-PER	[U-99% 13C; U-99% 15N]	0.4 mM
2	sodium phosphate	natural abundance	50 mM
3	sodium chloride	natural abundance	50 mM

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr34627_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr34627_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	1484		91.0 (chain: 1, length: 144)
1	Chemical shift references	chem_shift_reference_1	OK	3		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 144, Sequence coverage: 91.0%
- Total number of assignments
  - ¹³C chemical shifts: 529
  - ¹H chemical shifts: 840
  - ¹⁵N chemical shifts: 115
- Completeness of assignments
  - Entity_assemble_ID: 1
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	648	529	81.6
¹H chemical shifts	856	680	79.4
¹⁵N chemical shifts	153	115	75.2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	288	253	87.8
¹H chemical shifts	291	242	83.2
¹⁵N chemical shifts	137	115	83.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	360	276	76.7
¹H chemical shifts	565	438	77.5
¹⁵N chemical shifts	16	0	0.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	91	80	87.9
¹H chemical shifts	91	80	87.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	48	2	4.2
¹H chemical shifts	48	32	66.7

Keywords Inner Membrane Platform, Legionella pneumophila, LspC, PROTEIN BINDING, Type II Secretion System

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Found 1 Document (0.373 seconds)

BMRB: 34627

Sample

Related entities 1. General secretion pathway protein C, : 2 entities Detail

Experiments performed 11 experiments Detail

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Chemical shift validation 3 contents Detail