G-quadruplex structure of the C. elegans telomeric repeat: A two tetrads basket type conformation stabilised by a Hoogsteen C-T base-pair
ID | Entity ID | Seq ID | Comp ID | Atom ID | Atom type | Val | Val err | Ambig. code |
---|---|---|---|---|---|---|---|---|
1 | 1 | 1 | DG | H1 | H | 11.707 | 0.005 | 1 |
2 | 1 | 1 | DG | H1' | H | 5.743 | 0.002 | 1 |
3 | 1 | 1 | DG | H2' | H | 2.666 | 0.012 | 1 |
4 | 1 | 1 | DG | H2'' | H | 2.861 | 0.014 | 1 |
5 | 1 | 1 | DG | H3' | H | 4.800 | 0.005 | 1 |
6 | 1 | 1 | DG | H4' | H | 4.234 | 0.006 | 1 |
7 | 1 | 1 | DG | H5' | H | 4.102 | 0.002 | 1 |
8 | 1 | 1 | DG | H8 | H | 7.240 | 0.004 | 1 |
9 | 1 | 1 | DG | H21 | H | 10.390 | 0.004 | 1 |
10 | 1 | 1 | DG | H22 | H | 6.181 | 0.002 | 1 |
11 | 1 | 1 | DG | C1' | C | 87.172 | 0.000 | 1 |
12 | 1 | 1 | DG | C2' | C | 35.072 | 0.010 | 1 |
13 | 1 | 1 | DG | C8 | C | 138.658 | 0.000 | 1 |
14 | 1 | 2 | DG | H1 | H | 11.941 | 0.002 | 1 |
15 | 1 | 2 | DG | H1' | H | 5.925 | 0.004 | 1 |
16 | 1 | 2 | DG | H2' | H | 2.318 | 0.006 | 1 |
17 | 1 | 2 | DG | H2'' | H | 2.453 | 0.014 | 1 |
18 | 1 | 2 | DG | H3' | H | 4.934 | 0.003 | 1 |
19 | 1 | 2 | DG | H4' | H | 4.236 | 0.004 | 1 |
20 | 1 | 2 | DG | H5' | H | 4.089 | 0.005 | 1 |
21 | 1 | 2 | DG | H5'' | H | 3.993 | 0.004 | 1 |
22 | 1 | 2 | DG | H8 | H | 7.652 | 0.001 | 1 |
23 | 1 | 2 | DG | C1' | C | 80.704 | 0.000 | 1 |
24 | 1 | 2 | DG | C2' | C | 37.148 | 0.024 | 1 |
25 | 1 | 2 | DG | C8 | C | 134.964 | 0.000 | 1 |
26 | 1 | 3 | DC | H1' | H | 6.179 | 0.003 | 1 |
27 | 1 | 3 | DC | H2' | H | 2.206 | 0.015 | 1 |
28 | 1 | 3 | DC | H2'' | H | 2.458 | 0.011 | 1 |
29 | 1 | 3 | DC | H3' | H | 4.758 | 0.000 | 1 |
30 | 1 | 3 | DC | H4' | H | 4.227 | 0.002 | 1 |
31 | 1 | 3 | DC | H5 | H | 5.924 | 0.000 | 1 |
32 | 1 | 3 | DC | H5' | H | 4.023 | 0.000 | 1 |
33 | 1 | 3 | DC | H6 | H | 7.728 | 0.001 | 1 |
34 | 1 | 3 | DC | C1' | C | 85.901 | 0.000 | 1 |
35 | 1 | 3 | DC | C2' | C | 38.662 | 0.010 | 1 |
36 | 1 | 3 | DC | C6 | C | 141.251 | 0.000 | 1 |
37 | 1 | 4 | DT | H1' | H | 5.679 | 0.003 | 1 |
38 | 1 | 4 | DT | H2' | H | 1.681 | 0.011 | 1 |
39 | 1 | 4 | DT | H2'' | H | 2.027 | 0.009 | 1 |
40 | 1 | 4 | DT | H3' | H | 4.732 | 0.000 | 1 |
41 | 1 | 4 | DT | H4' | H | 4.496 | 0.004 | 1 |
42 | 1 | 4 | DT | H5' | H | 4.050 | 0.004 | 1 |
43 | 1 | 4 | DT | H5'' | H | 3.956 | 0.011 | 1 |
44 | 1 | 4 | DT | H6 | H | 7.220 | 0.003 | 1 |
45 | 1 | 4 | DT | H71 | H | 1.645 | 0.013 | 1 |
46 | 1 | 4 | DT | H72 | H | 1.645 | 0.013 | 1 |
47 | 1 | 4 | DT | H73 | H | 1.645 | 0.013 | 1 |
48 | 1 | 4 | DT | C1' | C | 84.691 | 0.000 | 1 |
49 | 1 | 4 | DT | C2' | C | 38.052 | 0.000 | 1 |
50 | 1 | 4 | DT | C6 | C | 136.215 | 0.000 | 1 |
51 | 1 | 4 | DT | C7 | C | 11.799 | 0.000 | 1 |
52 | 1 | 5 | DT | H1' | H | 5.726 | 0.004 | 1 |
53 | 1 | 5 | DT | H2' | H | 1.721 | 0.012 | 1 |
54 | 1 | 5 | DT | H2'' | H | 1.966 | 0.011 | 1 |
55 | 1 | 5 | DT | H4' | H | 4.353 | 0.006 | 1 |
56 | 1 | 5 | DT | H5' | H | 3.416 | 0.045 | 1 |
57 | 1 | 5 | DT | H6 | H | 7.143 | 0.002 | 1 |
58 | 1 | 5 | DT | H71 | H | 1.376 | 0.015 | 1 |
59 | 1 | 5 | DT | H72 | H | 1.376 | 0.015 | 1 |
60 | 1 | 5 | DT | H73 | H | 1.376 | 0.015 | 1 |
61 | 1 | 5 | DT | C1' | C | 84.307 | 0.000 | 1 |
62 | 1 | 5 | DT | C2' | C | 38.444 | 0.009 | 1 |
63 | 1 | 5 | DT | C4' | C | 85.599 | 0.000 | 1 |
64 | 1 | 5 | DT | C6 | C | 136.159 | 0.000 | 1 |
65 | 1 | 5 | DT | C7 | C | 11.734 | 0.000 | 1 |
66 | 1 | 6 | DA | H1' | H | 5.992 | 0.007 | 1 |
67 | 1 | 6 | DA | H2 | H | 7.818 | 0.000 | 1 |
68 | 1 | 6 | DA | H2' | H | 2.326 | 0.004 | 1 |
69 | 1 | 6 | DA | H2'' | H | 2.621 | 0.003 | 1 |
70 | 1 | 6 | DA | H3' | H | 4.731 | 0.002 | 1 |
71 | 1 | 6 | DA | H4' | H | 4.117 | 0.005 | 1 |
72 | 1 | 6 | DA | H5' | H | 4.008 | 0.000 | 1 |
73 | 1 | 6 | DA | H8 | H | 7.449 | 0.007 | 1 |
74 | 1 | 6 | DA | C1' | C | 83.851 | 0.000 | 1 |
75 | 1 | 6 | DA | C2 | C | 152.485 | 0.000 | 1 |
76 | 1 | 6 | DA | C8 | C | 136.933 | 0.000 | 1 |
77 | 1 | 7 | DG | H1 | H | 11.271 | 0.006 | 1 |
78 | 1 | 7 | DG | H1' | H | 5.691 | 0.004 | 1 |
79 | 1 | 7 | DG | H2' | H | 2.495 | 0.011 | 1 |
80 | 1 | 7 | DG | H2'' | H | 3.000 | 0.011 | 1 |
81 | 1 | 7 | DG | H3' | H | 4.721 | 0.000 | 1 |
82 | 1 | 7 | DG | H4' | H | 4.170 | 0.006 | 1 |
83 | 1 | 7 | DG | H5' | H | 3.990 | 0.005 | 1 |
84 | 1 | 7 | DG | H8 | H | 7.125 | 0.004 | 1 |
85 | 1 | 7 | DG | C1' | C | 86.062 | 0.000 | 1 |
86 | 1 | 7 | DG | C2' | C | 33.287 | 0.004 | 1 |
87 | 1 | 7 | DG | C8 | C | 138.729 | 0.000 | 1 |
88 | 1 | 8 | DG | H1 | H | 11.700 | 0.002 | 1 |
89 | 1 | 8 | DG | H1' | H | 5.778 | 0.001 | 1 |
90 | 1 | 8 | DG | H2' | H | 2.314 | 0.012 | 1 |
91 | 1 | 8 | DG | H2'' | H | 2.526 | 0.009 | 1 |
92 | 1 | 8 | DG | H3' | H | 4.756 | 0.006 | 1 |
93 | 1 | 8 | DG | H4' | H | 4.292 | 0.007 | 1 |
94 | 1 | 8 | DG | H5' | H | 3.870 | 0.008 | 1 |
95 | 1 | 8 | DG | H8 | H | 7.816 | 0.001 | 1 |
96 | 1 | 8 | DG | C1' | C | 81.255 | 0.000 | 1 |
97 | 1 | 8 | DG | C2' | C | 36.201 | 0.009 | 1 |
98 | 1 | 8 | DG | C8 | C | 135.975 | 0.000 | 1 |
99 | 1 | 9 | DC | H1' | H | 5.409 | 0.002 | 1 |
100 | 1 | 9 | DC | H2' | H | 0.977 | 0.007 | 1 |
101 | 1 | 9 | DC | H2'' | H | 1.983 | 0.008 | 1 |
102 | 1 | 9 | DC | H3' | H | 4.749 | 0.000 | 1 |
103 | 1 | 9 | DC | H4' | H | 3.732 | 0.004 | 1 |
104 | 1 | 9 | DC | H5 | H | 5.337 | 0.004 | 1 |
105 | 1 | 9 | DC | H5' | H | 4.204 | 0.007 | 1 |
106 | 1 | 9 | DC | H5'' | H | 3.877 | 0.009 | 1 |
107 | 1 | 9 | DC | H6 | H | 6.859 | 0.004 | 1 |
108 | 1 | 9 | DC | C1' | C | 82.545 | 0.000 | 1 |
109 | 1 | 9 | DC | C2' | C | 37.118 | 0.015 | 1 |
110 | 1 | 9 | DC | C4' | C | 80.890 | 0.000 | 1 |
111 | 1 | 9 | DC | C6 | C | 138.897 | 0.000 | 1 |
112 | 1 | 10 | DT | H1' | H | 6.303 | 0.003 | 1 |
113 | 1 | 10 | DT | H2' | H | 1.935 | 0.010 | 1 |
114 | 1 | 10 | DT | H3' | H | 4.909 | 0.007 | 1 |
115 | 1 | 10 | DT | H4' | H | 4.397 | 0.002 | 1 |
116 | 1 | 10 | DT | H5' | H | 3.377 | 0.006 | 1 |
117 | 1 | 10 | DT | H5'' | H | 3.305 | 0.012 | 1 |
118 | 1 | 10 | DT | H6 | H | 6.960 | 0.002 | 1 |
119 | 1 | 10 | DT | H71 | H | 1.287 | 0.011 | 1 |
120 | 1 | 10 | DT | H72 | H | 1.287 | 0.011 | 1 |
121 | 1 | 10 | DT | H73 | H | 1.287 | 0.011 | 1 |
122 | 1 | 10 | DT | C2' | C | 35.875 | 0.000 | 1 |
123 | 1 | 10 | DT | C6 | C | 137.247 | 0.000 | 1 |
124 | 1 | 10 | DT | C7 | C | 11.047 | 0.000 | 1 |
125 | 1 | 11 | DT | H1' | H | 5.273 | 0.001 | 1 |
126 | 1 | 11 | DT | H2' | H | 1.587 | 0.011 | 1 |
127 | 1 | 11 | DT | H2'' | H | 2.304 | 0.012 | 1 |
128 | 1 | 11 | DT | H3 | H | 10.133 | 0.001 | 1 |
129 | 1 | 11 | DT | H3' | H | 4.554 | 0.001 | 1 |
130 | 1 | 11 | DT | H4' | H | 4.287 | 0.003 | 1 |
131 | 1 | 11 | DT | H5' | H | 3.973 | 0.012 | 1 |
132 | 1 | 11 | DT | H5'' | H | 3.833 | 0.001 | 1 |
133 | 1 | 11 | DT | H6 | H | 6.970 | 0.003 | 1 |
134 | 1 | 11 | DT | H71 | H | 1.330 | 0.012 | 1 |
135 | 1 | 11 | DT | H72 | H | 1.330 | 0.012 | 1 |
136 | 1 | 11 | DT | H73 | H | 1.330 | 0.012 | 1 |
137 | 1 | 11 | DT | C1' | C | 88.504 | 0.000 | 1 |
138 | 1 | 11 | DT | C2' | C | 40.485 | 0.033 | 1 |
139 | 1 | 11 | DT | C6 | C | 136.712 | 0.000 | 1 |
140 | 1 | 11 | DT | C7 | C | 11.779 | 0.000 | 1 |
141 | 1 | 12 | DA | H1' | H | 6.089 | 0.001 | 1 |
142 | 1 | 12 | DA | H2 | H | 7.569 | 0.000 | 1 |
143 | 1 | 12 | DA | H2' | H | 2.232 | 0.014 | 1 |
144 | 1 | 12 | DA | H2'' | H | 2.514 | 0.013 | 1 |
145 | 1 | 12 | DA | H3' | H | 4.776 | 0.000 | 1 |
146 | 1 | 12 | DA | H4' | H | 4.378 | 0.001 | 1 |
147 | 1 | 12 | DA | H5' | H | 2.853 | 0.005 | 1 |
148 | 1 | 12 | DA | H5'' | H | 2.631 | 0.005 | 1 |
149 | 1 | 12 | DA | H8 | H | 7.978 | 0.001 | 1 |
150 | 1 | 12 | DA | C1' | C | 82.582 | 0.000 | 1 |
151 | 1 | 12 | DA | C2 | C | 151.816 | 0.000 | 1 |
152 | 1 | 12 | DA | C2' | C | 40.195 | 0.002 | 1 |
153 | 1 | 12 | DA | C8 | C | 139.722 | 0.000 | 1 |
154 | 1 | 13 | DG | H1 | H | 11.912 | 0.001 | 1 |
155 | 1 | 13 | DG | H1' | H | 5.874 | 0.006 | 1 |
156 | 1 | 13 | DG | H2' | H | 2.304 | 0.026 | 1 |
157 | 1 | 13 | DG | H3' | H | 4.748 | 0.003 | 1 |
158 | 1 | 13 | DG | H4' | H | 4.281 | 0.001 | 1 |
159 | 1 | 13 | DG | H5' | H | 4.091 | 0.002 | 1 |
160 | 1 | 13 | DG | H8 | H | 7.328 | 0.002 | 1 |
161 | 1 | 13 | DG | C1' | C | 80.925 | 0.000 | 1 |
162 | 1 | 13 | DG | C2' | C | 38.282 | 0.000 | 1 |
163 | 1 | 13 | DG | C8 | C | 139.413 | 0.000 | 1 |
164 | 1 | 14 | DG | H1 | H | 11.730 | 0.003 | 1 |
165 | 1 | 14 | DG | H1' | H | 5.877 | 0.003 | 1 |
166 | 1 | 14 | DG | H2' | H | 2.635 | 0.012 | 1 |
167 | 1 | 14 | DG | H2'' | H | 3.211 | 0.014 | 1 |
168 | 1 | 14 | DG | H3' | H | 4.745 | 0.000 | 1 |
169 | 1 | 14 | DG | H4' | H | 4.278 | 0.001 | 1 |
170 | 1 | 14 | DG | H5' | H | 4.083 | 0.005 | 1 |
171 | 1 | 14 | DG | H5'' | H | 3.954 | 0.004 | 1 |
172 | 1 | 14 | DG | H8 | H | 7.462 | 0.003 | 1 |
173 | 1 | 14 | DG | C1' | C | 86.773 | 0.000 | 1 |
174 | 1 | 14 | DG | C2' | C | 32.445 | 0.009 | 1 |
175 | 1 | 14 | DG | C8 | C | 134.621 | 0.000 | 1 |
176 | 1 | 15 | DC | H1' | H | 6.221 | 0.003 | 1 |
177 | 1 | 15 | DC | H2' | H | 2.206 | 0.012 | 1 |
178 | 1 | 15 | DC | H2'' | H | 2.444 | 0.013 | 1 |
179 | 1 | 15 | DC | H3' | H | 4.829 | 0.003 | 1 |
180 | 1 | 15 | DC | H4' | H | 4.363 | 0.001 | 1 |
181 | 1 | 15 | DC | H5 | H | 6.081 | 0.000 | 1 |
182 | 1 | 15 | DC | H5' | H | 4.158 | 0.008 | 1 |
183 | 1 | 15 | DC | H5'' | H | 4.033 | 0.004 | 1 |
184 | 1 | 15 | DC | H6 | H | 7.909 | 0.004 | 1 |
185 | 1 | 15 | DC | C1' | C | 86.494 | 0.000 | 1 |
186 | 1 | 15 | DC | C2' | C | 39.293 | 0.003 | 1 |
187 | 1 | 15 | DC | C6 | C | 140.861 | 0.000 | 1 |
188 | 1 | 16 | DT | H1' | H | 6.201 | 0.003 | 1 |
189 | 1 | 16 | DT | H2' | H | 2.202 | 0.014 | 1 |
190 | 1 | 16 | DT | H2'' | H | 2.292 | 0.009 | 1 |
191 | 1 | 16 | DT | H3' | H | 4.675 | 0.002 | 1 |
192 | 1 | 16 | DT | H4' | H | 4.183 | 0.002 | 1 |
193 | 1 | 16 | DT | H5' | H | 3.993 | 0.004 | 1 |
194 | 1 | 16 | DT | H6 | H | 7.601 | 0.001 | 1 |
195 | 1 | 16 | DT | H71 | H | 1.764 | 0.019 | 1 |
196 | 1 | 16 | DT | H72 | H | 1.764 | 0.019 | 1 |
197 | 1 | 16 | DT | H73 | H | 1.764 | 0.019 | 1 |
198 | 1 | 16 | DT | C1' | C | 84.963 | 0.000 | 1 |
199 | 1 | 16 | DT | C2' | C | 38.291 | 0.004 | 1 |
200 | 1 | 16 | DT | C6 | C | 137.191 | 0.000 | 1 |
201 | 1 | 16 | DT | C7 | C | 11.566 | 0.000 | 1 |
202 | 1 | 17 | DT | H1' | H | 5.520 | 0.001 | 1 |
203 | 1 | 17 | DT | H2' | H | 0.915 | 0.007 | 1 |
204 | 1 | 17 | DT | H2'' | H | 1.378 | 0.005 | 1 |
205 | 1 | 17 | DT | H3' | H | 4.535 | 0.004 | 1 |
206 | 1 | 17 | DT | H4' | H | 4.183 | 0.006 | 1 |
207 | 1 | 17 | DT | H5' | H | 3.947 | 0.004 | 1 |
208 | 1 | 17 | DT | H5'' | H | 3.730 | 0.010 | 1 |
209 | 1 | 17 | DT | H6 | H | 6.959 | 0.002 | 1 |
210 | 1 | 17 | DT | H71 | H | 1.351 | 0.014 | 1 |
211 | 1 | 17 | DT | H72 | H | 1.351 | 0.014 | 1 |
212 | 1 | 17 | DT | H73 | H | 1.351 | 0.014 | 1 |
213 | 1 | 17 | DT | C1' | C | 84.384 | 0.000 | 1 |
214 | 1 | 17 | DT | C2' | C | 36.451 | 0.020 | 1 |
215 | 1 | 17 | DT | C6 | C | 135.016 | 0.000 | 1 |
216 | 1 | 17 | DT | C7 | C | 11.297 | 0.000 | 1 |
217 | 1 | 18 | DA | H1' | H | 6.140 | 0.003 | 1 |
218 | 1 | 18 | DA | H2 | H | 8.162 | 0.001 | 1 |
219 | 1 | 18 | DA | H2' | H | 2.650 | 0.014 | 1 |
220 | 1 | 18 | DA | H2'' | H | 2.851 | 0.014 | 1 |
221 | 1 | 18 | DA | H3' | H | 4.864 | 0.000 | 1 |
222 | 1 | 18 | DA | H4' | H | 4.238 | 0.002 | 1 |
223 | 1 | 18 | DA | H5' | H | 3.837 | 0.005 | 1 |
224 | 1 | 18 | DA | H5'' | H | 3.658 | 0.004 | 1 |
225 | 1 | 18 | DA | H8 | H | 8.127 | 0.002 | 1 |
226 | 1 | 18 | DA | C1' | C | 82.936 | 0.000 | 1 |
227 | 1 | 18 | DA | C2 | C | 153.112 | 0.000 | 1 |
228 | 1 | 18 | DA | C2' | C | 36.239 | 0.001 | 1 |
229 | 1 | 18 | DA | C8 | C | 138.395 | 0.000 | 1 |
230 | 1 | 19 | DG | H1 | H | 11.566 | 0.006 | 1 |
231 | 1 | 19 | DG | H1' | H | 5.896 | 0.001 | 1 |
232 | 1 | 19 | DG | H2' | H | 2.807 | 0.013 | 1 |
233 | 1 | 19 | DG | H2'' | H | 3.384 | 0.017 | 1 |
234 | 1 | 19 | DG | H3' | H | 4.801 | 0.005 | 1 |
235 | 1 | 19 | DG | H4' | H | 4.370 | 0.004 | 1 |
236 | 1 | 19 | DG | H5' | H | 4.162 | 0.007 | 1 |
237 | 1 | 19 | DG | H5'' | H | 4.043 | 0.006 | 1 |
238 | 1 | 19 | DG | H8 | H | 7.152 | 0.002 | 1 |
239 | 1 | 19 | DG | C1' | C | 86.753 | 0.000 | 1 |
240 | 1 | 19 | DG | C2' | C | 32.722 | 0.003 | 1 |
241 | 1 | 19 | DG | C8 | C | 139.058 | 0.000 | 1 |
242 | 1 | 20 | DG | H1 | H | 11.540 | 0.001 | 1 |
243 | 1 | 20 | DG | H1' | H | 6.017 | 0.002 | 1 |
244 | 1 | 20 | DG | H2' | H | 2.214 | 0.018 | 1 |
245 | 1 | 20 | DG | H2'' | H | 2.443 | 0.016 | 1 |
246 | 1 | 20 | DG | H3' | H | 4.603 | 0.000 | 1 |
247 | 1 | 20 | DG | H4' | H | 4.373 | 0.000 | 1 |
248 | 1 | 20 | DG | H5' | H | 4.187 | 0.004 | 1 |
249 | 1 | 20 | DG | H5'' | H | 4.083 | 0.001 | 1 |
250 | 1 | 20 | DG | H8 | H | 8.042 | 0.001 | 1 |
251 | 1 | 20 | DG | C1' | C | 81.069 | 0.000 | 1 |
252 | 1 | 20 | DG | C2' | C | 39.862 | 0.004 | 1 |
253 | 1 | 20 | DG | C8 | C | 136.341 | 0.000 | 1 |