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G-quadruplex structure of the C. elegans telomeric repeat: A two tetrads basket type conformation stabilised by a Hoogsteen C-T base-pair
Authors
Marquevielle, J., De Rache, A., Amrane, S.
Assembly
DNA (5'-D(*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*G)-3')
Entity
1. DNA (5'-D(*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*G)-3'), entity 1 (polymer, Thiol state: not present), 20 monomers, 6283.983 Da Detail

GGCTTAGGCT TAGGCTTAGG


2. DNA (5'-D(*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*G)-3'), entity K (non-polymer), 39.098 Da
Total weight
6323.081 Da
Max. entity weight
6283.983 Da
Source organism
Caenorhabditis elegans
Exptl. method
solution NMR
Data set
assigned_chemical_shifts
Chemcal Shifts
1H: 184, 13C: 69 assignments Detail
IDEntity IDSeq IDComp IDAtom IDAtom typeValVal errAmbig. code
111DGH1H11.7070.0051
211DGH1'H5.7430.0021
311DGH2'H2.6660.0121
411DGH2''H2.8610.0141
511DGH3'H4.8000.0051
611DGH4'H4.2340.0061
711DGH5'H4.1020.0021
811DGH8H7.2400.0041
911DGH21H10.3900.0041
1011DGH22H6.1810.0021
1111DGC1'C87.1720.0001
1211DGC2'C35.0720.0101
1311DGC8C138.6580.0001
1412DGH1H11.9410.0021
1512DGH1'H5.9250.0041
1612DGH2'H2.3180.0061
1712DGH2''H2.4530.0141
1812DGH3'H4.9340.0031
1912DGH4'H4.2360.0041
2012DGH5'H4.0890.0051
2112DGH5''H3.9930.0041
2212DGH8H7.6520.0011
2312DGC1'C80.7040.0001
2412DGC2'C37.1480.0241
2512DGC8C134.9640.0001
2613DCH1'H6.1790.0031
2713DCH2'H2.2060.0151
2813DCH2''H2.4580.0111
2913DCH3'H4.7580.0001
3013DCH4'H4.2270.0021
3113DCH5H5.9240.0001
3213DCH5'H4.0230.0001
3313DCH6H7.7280.0011
3413DCC1'C85.9010.0001
3513DCC2'C38.6620.0101
3613DCC6C141.2510.0001
3714DTH1'H5.6790.0031
3814DTH2'H1.6810.0111
3914DTH2''H2.0270.0091
4014DTH3'H4.7320.0001
4114DTH4'H4.4960.0041
4214DTH5'H4.0500.0041
4314DTH5''H3.9560.0111
4414DTH6H7.2200.0031
4514DTH71H1.6450.0131
4614DTH72H1.6450.0131
4714DTH73H1.6450.0131
4814DTC1'C84.6910.0001
4914DTC2'C38.0520.0001
5014DTC6C136.2150.0001
5114DTC7C11.7990.0001
5215DTH1'H5.7260.0041
5315DTH2'H1.7210.0121
5415DTH2''H1.9660.0111
5515DTH4'H4.3530.0061
5615DTH5'H3.4160.0451
5715DTH6H7.1430.0021
5815DTH71H1.3760.0151
5915DTH72H1.3760.0151
6015DTH73H1.3760.0151
6115DTC1'C84.3070.0001
6215DTC2'C38.4440.0091
6315DTC4'C85.5990.0001
6415DTC6C136.1590.0001
6515DTC7C11.7340.0001
6616DAH1'H5.9920.0071
6716DAH2H7.8180.0001
6816DAH2'H2.3260.0041
6916DAH2''H2.6210.0031
7016DAH3'H4.7310.0021
7116DAH4'H4.1170.0051
7216DAH5'H4.0080.0001
7316DAH8H7.4490.0071
7416DAC1'C83.8510.0001
7516DAC2C152.4850.0001
7616DAC8C136.9330.0001
7717DGH1H11.2710.0061
7817DGH1'H5.6910.0041
7917DGH2'H2.4950.0111
8017DGH2''H3.0000.0111
8117DGH3'H4.7210.0001
8217DGH4'H4.1700.0061
8317DGH5'H3.9900.0051
8417DGH8H7.1250.0041
8517DGC1'C86.0620.0001
8617DGC2'C33.2870.0041
8717DGC8C138.7290.0001
8818DGH1H11.7000.0021
8918DGH1'H5.7780.0011
9018DGH2'H2.3140.0121
9118DGH2''H2.5260.0091
9218DGH3'H4.7560.0061
9318DGH4'H4.2920.0071
9418DGH5'H3.8700.0081
9518DGH8H7.8160.0011
9618DGC1'C81.2550.0001
9718DGC2'C36.2010.0091
9818DGC8C135.9750.0001
9919DCH1'H5.4090.0021
10019DCH2'H0.9770.0071
10119DCH2''H1.9830.0081
10219DCH3'H4.7490.0001
10319DCH4'H3.7320.0041
10419DCH5H5.3370.0041
10519DCH5'H4.2040.0071
10619DCH5''H3.8770.0091
10719DCH6H6.8590.0041
10819DCC1'C82.5450.0001
10919DCC2'C37.1180.0151
11019DCC4'C80.8900.0001
11119DCC6C138.8970.0001
112110DTH1'H6.3030.0031
113110DTH2'H1.9350.0101
114110DTH3'H4.9090.0071
115110DTH4'H4.3970.0021
116110DTH5'H3.3770.0061
117110DTH5''H3.3050.0121
118110DTH6H6.9600.0021
119110DTH71H1.2870.0111
120110DTH72H1.2870.0111
121110DTH73H1.2870.0111
122110DTC2'C35.8750.0001
123110DTC6C137.2470.0001
124110DTC7C11.0470.0001
125111DTH1'H5.2730.0011
126111DTH2'H1.5870.0111
127111DTH2''H2.3040.0121
128111DTH3H10.1330.0011
129111DTH3'H4.5540.0011
130111DTH4'H4.2870.0031
131111DTH5'H3.9730.0121
132111DTH5''H3.8330.0011
133111DTH6H6.9700.0031
134111DTH71H1.3300.0121
135111DTH72H1.3300.0121
136111DTH73H1.3300.0121
137111DTC1'C88.5040.0001
138111DTC2'C40.4850.0331
139111DTC6C136.7120.0001
140111DTC7C11.7790.0001
141112DAH1'H6.0890.0011
142112DAH2H7.5690.0001
143112DAH2'H2.2320.0141
144112DAH2''H2.5140.0131
145112DAH3'H4.7760.0001
146112DAH4'H4.3780.0011
147112DAH5'H2.8530.0051
148112DAH5''H2.6310.0051
149112DAH8H7.9780.0011
150112DAC1'C82.5820.0001
151112DAC2C151.8160.0001
152112DAC2'C40.1950.0021
153112DAC8C139.7220.0001
154113DGH1H11.9120.0011
155113DGH1'H5.8740.0061
156113DGH2'H2.3040.0261
157113DGH3'H4.7480.0031
158113DGH4'H4.2810.0011
159113DGH5'H4.0910.0021
160113DGH8H7.3280.0021
161113DGC1'C80.9250.0001
162113DGC2'C38.2820.0001
163113DGC8C139.4130.0001
164114DGH1H11.7300.0031
165114DGH1'H5.8770.0031
166114DGH2'H2.6350.0121
167114DGH2''H3.2110.0141
168114DGH3'H4.7450.0001
169114DGH4'H4.2780.0011
170114DGH5'H4.0830.0051
171114DGH5''H3.9540.0041
172114DGH8H7.4620.0031
173114DGC1'C86.7730.0001
174114DGC2'C32.4450.0091
175114DGC8C134.6210.0001
176115DCH1'H6.2210.0031
177115DCH2'H2.2060.0121
178115DCH2''H2.4440.0131
179115DCH3'H4.8290.0031
180115DCH4'H4.3630.0011
181115DCH5H6.0810.0001
182115DCH5'H4.1580.0081
183115DCH5''H4.0330.0041
184115DCH6H7.9090.0041
185115DCC1'C86.4940.0001
186115DCC2'C39.2930.0031
187115DCC6C140.8610.0001
188116DTH1'H6.2010.0031
189116DTH2'H2.2020.0141
190116DTH2''H2.2920.0091
191116DTH3'H4.6750.0021
192116DTH4'H4.1830.0021
193116DTH5'H3.9930.0041
194116DTH6H7.6010.0011
195116DTH71H1.7640.0191
196116DTH72H1.7640.0191
197116DTH73H1.7640.0191
198116DTC1'C84.9630.0001
199116DTC2'C38.2910.0041
200116DTC6C137.1910.0001
201116DTC7C11.5660.0001
202117DTH1'H5.5200.0011
203117DTH2'H0.9150.0071
204117DTH2''H1.3780.0051
205117DTH3'H4.5350.0041
206117DTH4'H4.1830.0061
207117DTH5'H3.9470.0041
208117DTH5''H3.7300.0101
209117DTH6H6.9590.0021
210117DTH71H1.3510.0141
211117DTH72H1.3510.0141
212117DTH73H1.3510.0141
213117DTC1'C84.3840.0001
214117DTC2'C36.4510.0201
215117DTC6C135.0160.0001
216117DTC7C11.2970.0001
217118DAH1'H6.1400.0031
218118DAH2H8.1620.0011
219118DAH2'H2.6500.0141
220118DAH2''H2.8510.0141
221118DAH3'H4.8640.0001
222118DAH4'H4.2380.0021
223118DAH5'H3.8370.0051
224118DAH5''H3.6580.0041
225118DAH8H8.1270.0021
226118DAC1'C82.9360.0001
227118DAC2C153.1120.0001
228118DAC2'C36.2390.0011
229118DAC8C138.3950.0001
230119DGH1H11.5660.0061
231119DGH1'H5.8960.0011
232119DGH2'H2.8070.0131
233119DGH2''H3.3840.0171
234119DGH3'H4.8010.0051
235119DGH4'H4.3700.0041
236119DGH5'H4.1620.0071
237119DGH5''H4.0430.0061
238119DGH8H7.1520.0021
239119DGC1'C86.7530.0001
240119DGC2'C32.7220.0031
241119DGC8C139.0580.0001
242120DGH1H11.5400.0011
243120DGH1'H6.0170.0021
244120DGH2'H2.2140.0181
245120DGH2''H2.4430.0161
246120DGH3'H4.6030.0001
247120DGH4'H4.3730.0001
248120DGH5'H4.1870.0041
249120DGH5''H4.0830.0011
250120DGH8H8.0420.0011
251120DGC1'C81.0690.0001
252120DGC2'C39.8620.0041
253120DGC8C136.3410.0001

Release date
2021-06-10
Citation
G-quadruplex structure of the C. elegans telomeric repeat: a two tetrads basket type conformation stabilized by a non-canonical C-T base-pair
Marquevielle, J., De Rache, A., Vialet, B., Morvan, E., Mergny, J.L., Amrane, S.
Nucleic Acids Res. (2022), 50, 7134-7146, PubMed 35736226 , DOI 10.1093/nar/gkac523 ,
Experiments performed 3 experiments Detail
Chemical shift validation 4 contents Detail
Keywords C. elegans telomere, DNA, G-quadruplex