BMRBj - BMREntryMaster

Found 1 Document (0.538 seconds)

BMRB: 34640

7OX6

Solution structure of human interleukin-9

Authors

Savvides, S.N., Tripsianes, K., De Vos, T., Papageorgiou, A., Evangelidis, T.

Assembly

Interleukin-9

Entity

1. Interleukin-9 (polymer, Thiol state: all disulfide bound), 130 monomers, 14532.85 Da Detail

GSHMQGCPTL AGILDINFLI NKMQEDPASK CHCSANVTSC LCLGIPSDNC TRPCFSERLS QMTNTTMQTR YPLIFSRVKK SVEVLKNNKC PYFSCEQPCN QTTAGNALTF LKSLLEIFQK EKMRGMRGKI

Formula weight

14532.85 Da

Entity Connection

disulfide 5 Detail

ID	Type	Value order	Atom ID 1	Atom ID 2
1	disulfide	sing	1:CYS7:SG	1:CYS90:SG
2	disulfide	sing	1:CYS31:SG	1:CYS40:SG
3	disulfide	sing	1:CYS33:SG	1:CYS42:SG
4	disulfide	sing	1:CYS50:SG	1:CYS99:SG
5	disulfide	sing	1:CYS54:SG	1:CYS95:SG

Source organism

Homo sapiens

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 95.4 %, Completeness: 77.4 %, Completeness (bb): 72.2 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	77.4 % (1179 of 1524)	82.1 % (655 of 798)	68.5 % (398 of 581)	86.9 % (126 of 145)
Backbone	72.2 % (553 of 766)	81.5 % (212 of 260)	60.3 % (231 of 383)	89.4 % (110 of 123)
Sidechain	82.6 % (728 of 881)	81.0 % (436 of 538)	86.0 % (276 of 321)	72.7 % (16 of 22)
Aromatic	52.4 % (44 of 84)	47.6 % (20 of 42)	57.1 % (24 of 42)
Methyl	91.0 % (111 of 122)	86.9 % (53 of 61)	95.1 % (58 of 61)

1. entity 1

GSHMQGCPTL AGILDINFLI NKMQEDPASK CHCSANVTSC LCLGIPSDNC TRPCFSERLS QMTNTTMQTR YPLIFSRVKK SVEVLKNNKC PYFSCEQPCN QTTAGNALTF LKSLLEIFQK EKMRGMRGKI

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 60 mg/mL [U-13C; U-15N] Interleukin-9, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	Interleukin-9	[U-13C; U-15N]		60 mg/mL

Release date

2021-07-15

Citation

Structural basis of the activation and antagonism of the IL-9 signaling complex
De Vos, T., Godar, M., Bick, F., Papageorgiou, A., Evangelidis, T., Markovic, I., Mortier, E., Dumoutier, L., Tripsianes, K., Blanchetot, C., Savvides, S.N.

Related entities 1. Interleukin-9, : 1 : 4 : 2 : 5 entities Detail

Experiments performed 3 experiments Detail

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr34640_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	True (see coordinates for details)
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

Ptnr_site_1	Ptnr_site_2	Redox_state_prediction_1	Redox_state_prediction_2	Distance (Å)
1:7:CYS:SG	1:90:CYS:SG	oxidized, CA 52.577, CB 42.694 ppm	oxidized, CA 56.527, CB 42.057 ppm	n/a
1:31:CYS:SG	1:40:CYS:SG	oxidized, CA 53.697, CB 39.2 ppm	unknown, CA 54.566 ppm	n/a
1:33:CYS:SG	1:42:CYS:SG	unknown	oxidized, CA 55.198, CB 46.264 ppm	n/a
1:50:CYS:SG	1:99:CYS:SG	oxidized, CA 54.57, CB 38.97 ppm	oxidized, CA 54.764, CB 40.542 ppm	n/a
1:54:CYS:SG	1:95:CYS:SG	oxidized, CB 39.934 ppm	unknown	n/a

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr34640_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	1379		95.4 (chain: 1, length: 130)
1	Chemical shift references	chem_shift_reference_1	OK	3		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 130, Sequence coverage: 95.4%
- Total number of assignments
  - ¹H chemical shifts: 848
  - ¹³C chemical shifts: 405
  - ¹⁵N chemical shifts: 126
- Completeness of assignments
  - Entity_assemble_ID: 1
- Redox state of CYS
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	798	714	89.5
¹³C chemical shifts	581	405	69.7
¹⁵N chemical shifts	145	126	86.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	260	236	90.8
¹³C chemical shifts	260	120	46.2
¹⁵N chemical shifts	123	110	89.4

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	538	478	88.8
¹³C chemical shifts	321	285	88.8
¹⁵N chemical shifts	22	16	72.7

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	67	67	100.0
¹³C chemical shifts	67	67	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	42	24	57.1
¹³C chemical shifts	42	24	57.1

Keywords CYTOKINE, IL-9, four-helical bundle

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Found 1 Document (0.538 seconds)

BMRB: 34640

Sample

Related entities 1. Interleukin-9, : 1 : 4 : 2 : 5 entities Detail

Experiments performed 3 experiments Detail

Instrument

Sample

Instrument

Sample

Instrument

Sample

Chemical shift validation 3 contents Detail