BMRB: 34769

Hairpin of adopted by oligonucleotide A36 found in the promoter of AUTS2 gene.

Authors

Novotny, A.

Assembly

A36

Entity

1. A36 (polymer, Thiol state: not present), 36 monomers, 11317.22 Da Detail

CGAGCGAGCG AGCGAAAGCA CGAACGAGCG AGCGAG

Formula weight

11317.22 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chemcal Shifts

¹H: 233 assignments Detail

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ID	Entity ID	Seq ID	Comp ID	Atom ID	Atom type	Val	Val err	Ambig. code
1	1	1	DC	H1'	H	6.109	0.001	1
2	1	1	DC	H2'	H	1.146	0.001	1
3	1	1	DC	H2''	H	2.189	0.001	1
4	1	1	DC	H3'	H	4.617	0	1
5	1	1	DC	H4'	H	4.066	0	1
6	1	1	DC	H5	H	5.664	0	1
7	1	1	DC	H6	H	7.267	0.001	1
8	1	2	DG	H1'	H	6.099	0.001	1
9	1	2	DG	H2'	H	2.914	0.001	1
10	1	2	DG	H2''	H	2.738	0	1
11	1	2	DG	H3'	H	5.056	0	1
12	1	2	DG	H4'	H	4.547	0.001	1
13	1	2	DG	H8	H	8.177	0	1
14	1	3	DA	H1'	H	5.619	0.001	1
15	1	3	DA	H2	H	7.877	0.001	1
16	1	3	DA	H2'	H	1.113	0.002	1
17	1	3	DA	H2''	H	2.36	0.002	1
18	1	3	DA	H3'	H	4.777	0.001	1
19	1	3	DA	H4'	H	4.324	0.001	1
20	1	3	DA	H8	H	7.451	0.001	1
21	1	4	DG	H1'	H	5.375	0.001	1
22	1	4	DG	H2'	H	2.471	0.001	1
23	1	4	DG	H2''	H	2.471	0.001	1
24	1	4	DG	H3'	H	4.852	0	1
25	1	4	DG	H4'	H	4.287	0	1
26	1	4	DG	H8	H	7.806	0	1
27	1	5	DC	H1'	H	5.952	0	1
28	1	5	DC	H2'	H	1.318	0.001	1
29	1	5	DC	H2''	H	2.049	0.001	1
30	1	5	DC	H3'	H	4.726	0	1
31	1	5	DC	H4'	H	4.161	0	1
32	1	5	DC	H5	H	4.891	0	1
33	1	5	DC	H6	H	6.875	0.001	1
34	1	6	DG	H1'	H	5.918	0	1
35	1	6	DG	H2'	H	2.793	0.002	1
36	1	6	DG	H2''	H	2.607	0.001	1
37	1	6	DG	H3'	H	4.97	0.001	1
38	1	6	DG	H4'	H	4.46	0.001	1
39	1	6	DG	H8	H	8.088	0.001	1
40	1	7	DA	H1'	H	5.593	0.001	1
41	1	7	DA	H2	H	7.835	0	1
42	1	7	DA	H2'	H	0.998	0.001	1
43	1	7	DA	H2''	H	2.293	0.001	1
44	1	7	DA	H3'	H	4.725	0	1
45	1	7	DA	H4'	H	4.288	0.001	1
46	1	7	DA	H8	H	7.273	0.001	1
47	1	8	DG	H1'	H	5.365	0.001	1
48	1	8	DG	H2'	H	2.453	0.001	1
49	1	8	DG	H2''	H	2.453	0.001	1
50	1	8	DG	H3'	H	4.838	0	1
51	1	8	DG	H4'	H	4.277	0	1
52	1	8	DG	H8	H	7.764	0.001	1
53	1	9	DC	H1'	H	5.939	0.001	1
54	1	9	DC	H2'	H	1.312	0.001	1
55	1	9	DC	H2''	H	2.039	0.001	1
56	1	9	DC	H3'	H	4.724	0.001	1
57	1	9	DC	H4'	H	4.154	0	1
58	1	9	DC	H5	H	4.869	0.004	1
59	1	9	DC	H6	H	6.862	0.001	1
60	1	10	DG	H1'	H	5.915	0	1
61	1	10	DG	H2'	H	2.813	0.001	1
62	1	10	DG	H2''	H	2.633	0	1
63	1	10	DG	H3'	H	4.984	0	1
64	1	10	DG	H4'	H	4.461	0.002	1
65	1	10	DG	H8	H	8.087	0	1
66	1	11	DA	H1'	H	5.551	0.001	1
67	1	11	DA	H2	H	7.855	0	1
68	1	11	DA	H2'	H	1.004	0.001	1
69	1	11	DA	H2''	H	2.25	0.002	1
70	1	11	DA	H3'	H	4.723	0.001	1
71	1	11	DA	H4'	H	4.292	0.001	1
72	1	11	DA	H8	H	7.291	0.001	1
73	1	12	DG	H1'	H	5.592	0.001	1
74	1	12	DG	H2'	H	2.416	0.003	2
75	1	12	DG	H2''	H	2.54	0.001	2
76	1	12	DG	H3'	H	4.843	0	1
77	1	12	DG	H4'	H	4.295	0	1
78	1	12	DG	H8	H	7.744	0.001	1
79	1	13	DC	H1'	H	5.848	0.002	1
80	1	13	DC	H2'	H	1.365	0	1
81	1	13	DC	H2''	H	2.215	0	1
82	1	13	DC	H3'	H	4.725	0	1
83	1	13	DC	H4'	H	4.143	0	1
84	1	13	DC	H5	H	5.283	0	1
85	1	13	DC	H6	H	7.049	0.001	1
86	1	14	DG	H3'	H	4.725	0	1
87	1	14	DG	H4'	H	4.156	0	1
88	1	14	DG	H8	H	8.086	0.001	1
89	1	15	DA	H1'	H	5.503	0.001	1
90	1	15	DA	H2	H	7.467	0.001	1
91	1	15	DA	H2'	H	1.664	0.001	1
92	1	15	DA	H2''	H	2.272	0.002	1
93	1	15	DA	H3'	H	4.701	0	1
94	1	15	DA	H4'	H	4.215	0.001	1
95	1	15	DA	H8	H	7.316	0	1
96	1	16	DA	H1'	H	5.78	0	1
97	1	16	DA	H2'	H	1.827	0.002	1
98	1	16	DA	H2''	H	2.271	0	1
99	1	16	DA	H3'	H	4.773	0.001	1
100	1	16	DA	H4'	H	4.282	0	1
101	1	16	DA	H8	H	7.71	0.001	1
102	1	17	DA	H1'	H	5.715	0.003	1
103	1	17	DA	H2	H	7.468	0.002	1
104	1	17	DA	H2'	H	2.388	0	1
105	1	17	DA	H2''	H	2.522	0.001	1
106	1	17	DA	H3'	H	4.848	0.001	1
107	1	17	DA	H4'	H	4.278	0.002	1
108	1	17	DA	H8	H	7.946	0	1
109	1	18	DG	H1'	H	5.542	0.002	1
110	1	18	DG	H2'	H	2.597	0.002	1
111	1	18	DG	H2''	H	2.259	0.001	1
112	1	18	DG	H3'	H	4.755	0.002	1
113	1	18	DG	H4'	H	4.415	0.002	1
114	1	18	DG	H8	H	7.898	0	1
115	1	19	DC	H1'	H	5.763	0.001	1
116	1	19	DC	H2'	H	1.635	0	1
117	1	19	DC	H2''	H	2.051	0.001	1
118	1	19	DC	H3'	H	4.517	0.001	1
119	1	19	DC	H5	H	5.371	0	1
120	1	19	DC	H6	H	7.312	0.001	1
121	1	20	DA	H1'	H	6.217	0.001	1
122	1	20	DA	H2	H	8.038	0	1
123	1	20	DA	H2'	H	3.102	0.001	1
124	1	20	DA	H2''	H	2.785	0.001	1
125	1	20	DA	H3'	H	4.81	0.001	1
126	1	20	DA	H4'	H	4.327	0	1
127	1	20	DA	H5'	H	3.895	0	2
128	1	20	DA	H5''	H	3.895	0	2
129	1	20	DA	H8	H	8.087	0	1
130	1	21	DC	H1'	H	5.853	0.001	1
131	1	21	DC	H2'	H	1.481	0.001	2
132	1	21	DC	H2''	H	2.148	0.002	2
133	1	21	DC	H3'	H	4.729	0	1
134	1	21	DC	H4'	H	4.145	0	1
135	1	21	DC	H5	H	5.554	0.001	1
136	1	21	DC	H6	H	7.272	0.001	1
137	1	22	DG	H1'	H	6.101	0.002	1
138	1	22	DG	H2'	H	2.941	0.001	1
139	1	22	DG	H2''	H	2.709	0.002	1
140	1	22	DG	H3'	H	5.081	0.002	1
141	1	22	DG	H4'	H	4.485	0	1
142	1	22	DG	H8	H	8.149	0.001	1
143	1	23	DA	H1'	H	4.843	0.001	1
144	1	23	DA	H2	H	7.494	0	1
145	1	23	DA	H2'	H	1.983	0.001	2
146	1	23	DA	H2''	H	2.413	0.001	2
147	1	23	DA	H3'	H	4.64	0.001	1
148	1	23	DA	H4'	H	4.117	0.001	1
149	1	23	DA	H8	H	7.737	0.001	1
150	1	24	DA	H1'	H	5.887	0.001	1
151	1	24	DA	H2'	H	2.269	0.001	2
152	1	24	DA	H2''	H	2.698	0.002	2
153	1	24	DA	H3'	H	4.834	0	1
154	1	24	DA	H4'	H	4.347	0	1
155	1	24	DA	H8	H	8.253	0.002	1
156	1	25	DC	H1'	H	5.772	0.001	1
157	1	25	DC	H2'	H	1.198	0.002	1
158	1	25	DC	H2''	H	1.96	0	1
159	1	25	DC	H3'	H	4.701	0	1
160	1	25	DC	H4'	H	4.079	0.001	1
161	1	25	DC	H5	H	4.84	0.002	1
162	1	25	DC	H6	H	6.789	0	1
163	1	26	DG	H1'	H	5.873	0	1
164	1	26	DG	H2'	H	2.797	0.002	1
165	1	26	DG	H2''	H	2.601	0	1
166	1	26	DG	H3'	H	4.959	0.001	1
167	1	26	DG	H4'	H	4.433	0	1
168	1	26	DG	H8	H	8.056	0.001	1
169	1	27	DA	H1'	H	5.607	0.001	1
170	1	27	DA	H2	H	7.846	0	1
171	1	27	DA	H2'	H	1.001	0	1
172	1	27	DA	H2''	H	2.303	0	1
173	1	27	DA	H3'	H	4.726	0.001	1
174	1	27	DA	H4'	H	4.29	0.002	1
175	1	27	DA	H8	H	7.249	0	1
176	1	28	DG	H1'	H	5.368	0	1
177	1	28	DG	H2'	H	2.459	0	1
178	1	28	DG	H2''	H	2.459	0	1
179	1	28	DG	H3'	H	4.841	0.001	1
180	1	28	DG	H4'	H	4.28	0	1
181	1	28	DG	H8	H	7.769	0.001	1
182	1	29	DC	H1'	H	5.941	0	1
183	1	29	DC	H2'	H	1.315	0	1
184	1	29	DC	H2''	H	2.04	0.001	1
185	1	29	DC	H3'	H	4.723	0	1
186	1	29	DC	H4'	H	4.157	0	1
187	1	29	DC	H5	H	4.872	0.002	1
188	1	29	DC	H6	H	6.865	0.002	1
189	1	30	DG	H1'	H	5.922	0	1
190	1	30	DG	H2'	H	2.8	0.003	1
191	1	30	DG	H2''	H	2.622	0	1
192	1	30	DG	H3'	H	4.976	0.001	1
193	1	30	DG	H4'	H	4.46	0.001	1
194	1	30	DG	H8	H	8.087	0	1
195	1	31	DA	H1'	H	5.596	0.001	1
196	1	31	DA	H2	H	7.84	0	1
197	1	31	DA	H2'	H	1.011	0.002	1
198	1	31	DA	H2''	H	2.305	0.002	1
199	1	31	DA	H3'	H	4.73	0.003	1
200	1	31	DA	H4'	H	4.29	0.001	1
201	1	31	DA	H8	H	7.281	0.001	1
202	1	32	DG	H1'	H	5.384	0.001	1
203	1	32	DG	H2'	H	2.476	0.001	1
204	1	32	DG	H2''	H	2.476	0.001	1
205	1	32	DG	H3'	H	4.852	0.002	1
206	1	32	DG	H4'	H	4.284	0.001	1
207	1	32	DG	H8	H	7.788	0.001	1
208	1	33	DC	H1'	H	5.973	0.002	1
209	1	33	DC	H2'	H	1.339	0.002	1
210	1	33	DC	H2''	H	2.064	0.002	1
211	1	33	DC	H3'	H	4.739	0.001	1
212	1	33	DC	H4'	H	4.168	0	1
213	1	33	DC	H5	H	4.923	0.001	1
214	1	33	DC	H6	H	6.901	0.001	1
215	1	34	DG	H1'	H	6.031	0	1
216	1	34	DG	H2'	H	2.901	0	1
217	1	34	DG	H2''	H	2.733	0	1
218	1	34	DG	H3'	H	5.033	0.001	1
219	1	34	DG	H4'	H	4.534	0	1
220	1	34	DG	H8	H	8.151	0	1
221	1	35	DA	H1'	H	5.723	0	1
222	1	35	DA	H2	H	7.967	0	1
223	1	35	DA	H2'	H	1.149	0.001	1
224	1	35	DA	H2''	H	2.312	0.002	1
225	1	35	DA	H3'	H	4.783	0.001	1
226	1	35	DA	H4'	H	4.309	0.001	1
227	1	35	DA	H8	H	7.453	0	1
228	1	36	DG	H1'	H	5.874	0	1
229	1	36	DG	H2'	H	2.572	0	2
230	1	36	DG	H2''	H	2.319	0	2
231	1	36	DG	H3'	H	4.678	0.002	1
232	1	36	DG	H4'	H	4.107	0.001	1
233	1	36	DG	H8	H	7.866	0	1

Release date

2022-11-21

Citation

Structural polymorphism driven by a register shift in a CGAG-rich region found in the promoter of the neurodevelopmental regulator AUTS2 gene
Novotny, A., Plavec, J., Kocman, V.
Nucleic Acids Res. (2023), 51, 2602-2613, PubMed 36864756 , DOI 10.1093/nar/gkad117 , Abstract

Experiments performed 6 experiments Detail