BMRB: 34770

Hairpin adopted by oligonucleotide A38 found in the promoter of AUTS2 gene.

Authors

Novotny, A.

Assembly

A38

Entity

1. A38 (polymer, Thiol state: not present), 38 monomers, 11935.60 Da Detail

CGAGCGAGCG AGCGAAAGCA CGAACGAGCG AGCGAGCG

Formula weight

11935.6 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chemcal Shifts

¹H: 236 assignments Detail

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ID	Entity ID	Seq ID	Comp ID	Atom ID	Atom type	Val	Val err	Ambig. code
1	1	1	DC	H1'	H	5.957	0	1
2	1	1	DC	H2'	H	1.564	0	1
3	1	1	DC	H2''	H	2.101	0.001	1
4	1	1	DC	H3'	H	4.367	0.001	1
5	1	1	DC	H4'	H	3.882	0	1
6	1	1	DC	H6	H	7.479	0	1
7	1	2	DG	H1'	H	5.762	0	1
8	1	2	DG	H2'	H	2.575	0.001	1
9	1	2	DG	H2''	H	2.434	0.002	1
10	1	2	DG	H3'	H	4.821	0	1
11	1	2	DG	H8	H	7.723	0.001	1
12	1	3	DA	H1'	H	6.191	0.001	1
13	1	3	DA	H2	H	8.019	0	1
14	1	3	DA	H2'	H	2.385	0	1
15	1	3	DA	H2''	H	2.734	0	1
16	1	3	DA	H3'	H	4.905	0	1
17	1	3	DA	H4'	H	4.305	0	1
18	1	3	DA	H8	H	7.92	0	1
19	1	4	DG	H1'	H	5.327	0	1
20	1	4	DG	H2'	H	2.431	0.002	1
21	1	4	DG	H2''	H	2.519	0.001	1
22	1	4	DG	H3'	H	4.866	0	1
23	1	4	DG	H4'	H	4.302	0	1
24	1	4	DG	H8	H	7.962	0	1
25	1	5	DC	H1'	H	6.033	0	1
26	1	5	DC	H2'	H	1.295	0	1
27	1	5	DC	H2''	H	2.101	0.001	1
28	1	5	DC	H3'	H	4.749	0.002	1
29	1	5	DC	H4'	H	4.201	0	1
30	1	5	DC	H5	H	4.946	0	1
31	1	5	DC	H6	H	6.934	0.001	1
32	1	6	DG	H1'	H	5.943	0.002	1
33	1	6	DG	H2'	H	2.818	0.005	1
34	1	6	DG	H2''	H	2.631	0.002	1
35	1	6	DG	H3'	H	4.986	0.004	1
36	1	6	DG	H4'	H	4.465	0.002	1
37	1	6	DG	H8	H	8.114	0.001	1
38	1	7	DA	H1'	H	5.599	0.002	1
39	1	7	DA	H2	H	7.849	0.001	1
40	1	7	DA	H2'	H	1.008	0.002	1
41	1	7	DA	H2''	H	2.302	0	1
42	1	7	DA	H3'	H	4.73	0.002	1
43	1	7	DA	H4'	H	4.292	0.001	1
44	1	7	DA	H8	H	7.288	0.001	1
45	1	8	DG	H1'	H	5.369	0.001	1
46	1	8	DG	H2'	H	2.465	0.001	1
47	1	8	DG	H2''	H	2.465	0.001	1
48	1	8	DG	H3'	H	4.847	0	1
49	1	8	DG	H8	H	7.776	0.002	1
50	1	9	DC	H1'	H	5.946	0.001	1
51	1	9	DC	H2'	H	1.307	0.001	1
52	1	9	DC	H2''	H	2.04	0.002	1
53	1	9	DC	H3'	H	4.718	0	1
54	1	9	DC	H5	H	4.883	0	1
55	1	9	DC	H6	H	6.868	0.003	1
56	1	10	DG	H1'	H	5.909	0	1
57	1	10	DG	H2'	H	2.798	0.002	1
58	1	10	DG	H2''	H	2.609	0.001	1
59	1	10	DG	H3'	H	4.966	0	1
60	1	10	DG	H4'	H	4.45	0	1
61	1	10	DG	H8	H	8.078	0.001	1
62	1	11	DA	H1'	H	5.59	0.001	1
63	1	11	DA	H2	H	7.833	0.001	1
64	1	11	DA	H2'	H	0.998	0.001	1
65	1	11	DA	H2''	H	2.292	0.002	1
66	1	11	DA	H3'	H	4.72	0	1
67	1	11	DA	H4'	H	4.282	0.003	1
68	1	11	DA	H8	H	7.27	0	1
69	1	12	DG	H1'	H	5.301	0.001	1
70	1	12	DG	H2'	H	2.425	0.001	1
71	1	12	DG	H2''	H	2.425	0.001	1
72	1	12	DG	H3'	H	4.839	0	1
73	1	12	DG	H8	H	7.766	0.002	1
74	1	13	DC	H1'	H	5.941	0.001	1
75	1	13	DC	H2'	H	1.392	0.002	1
76	1	13	DC	H2''	H	2.118	0.001	1
77	1	13	DC	H3'	H	4.724	0.01	1
78	1	13	DC	H5	H	4.867	0	1
79	1	13	DC	H6	H	6.855	0	1
80	1	14	DG	H1'	H	5.91	0	1
81	1	14	DG	H2'	H	2.827	0.001	1
82	1	14	DG	H2''	H	2.626	0	1
83	1	14	DG	H3'	H	5.022	0	1
84	1	14	DG	H4'	H	4.488	0.001	1
85	1	14	DG	H8	H	8.103	0	1
86	1	15	DA	H1'	H	5.438	0.001	1
87	1	15	DA	H2	H	7.322	0.001	1
88	1	15	DA	H2'	H	1.69	0.002	1
89	1	15	DA	H2''	H	2.316	0.003	1
90	1	15	DA	H3'	H	4.752	0	1
91	1	15	DA	H4'	H	4.162	0	1
92	1	15	DA	H8	H	7.52	0	1
93	1	16	DA	H1'	H	5.569	0.001	1
94	1	16	DA	H2	H	7.838	0	1
95	1	16	DA	H2'	H	2.275	0.001	2
96	1	16	DA	H2''	H	2.463	0	2
97	1	16	DA	H3'	H	4.873	0.002	1
98	1	16	DA	H8	H	8.075	0.001	1
99	1	17	DA	H1'	H	5.865	0	1
100	1	17	DA	H2	H	7.845	0	1
101	1	17	DA	H2'	H	2.473	0.002	1
102	1	17	DA	H2''	H	2.641	0.001	1
103	1	17	DA	H3'	H	4.949	0	1
104	1	17	DA	H4'	H	4.335	0	1
105	1	17	DA	H8	H	7.97	0	1
106	1	18	DG	H1'	H	5.641	0	1
107	1	18	DG	H2'	H	2.47	0.001	1
108	1	18	DG	H2''	H	2.47	0.001	1
109	1	18	DG	H3'	H	4.872	0.001	1
110	1	18	DG	H4'	H	4.323	0	1
111	1	18	DG	H8	H	7.733	0.001	1
112	1	19	DC	H1'	H	5.826	0	1
113	1	19	DC	H2'	H	1.834	0.001	1
114	1	19	DC	H2''	H	2.203	0	1
115	1	19	DC	H3'	H	4.672	0.001	1
116	1	19	DC	H5	H	5.235	0	1
117	1	19	DC	H6	H	7.188	0.001	1
118	1	20	DA	H1'	H	6.178	0.001	1
119	1	20	DA	H2	H	8.044	0	1
120	1	20	DA	H2'	H	2.485	0.001	1
121	1	20	DA	H2''	H	2.485	0.001	1
122	1	20	DA	H3'	H	4.728	0	1
123	1	20	DA	H4'	H	4.267	0	1
124	1	20	DA	H8	H	8.251	0	1
125	1	21	DC	H1'	H	5.716	0	1
126	1	21	DC	H2'	H	1.7	0.001	1
127	1	21	DC	H2''	H	2.11	0	1
128	1	21	DC	H3'	H	4.499	0	1
129	1	21	DC	H5	H	5.41	0.001	1
130	1	21	DC	H6	H	7.352	0.001	1
131	1	22	DG	H1'	H	5.338	0	1
132	1	22	DG	H2'	H	2.503	0.002	1
133	1	22	DG	H2''	H	2.55	0.001	1
134	1	22	DG	H3'	H	4.703	0	1
135	1	22	DG	H8	H	7.693	0	1
136	1	23	DA	H1'	H	5.641	0	1
137	1	23	DA	H2	H	7.664	0.001	1
138	1	23	DA	H2'	H	2.576	0	1
139	1	23	DA	H2''	H	2.658	0.002	1
140	1	23	DA	H3'	H	4.927	0	1
141	1	23	DA	H4'	H	4.264	0	1
142	1	23	DA	H8	H	8.083	0	1
143	1	24	DA	H1'	H	6.046	0.001	1
144	1	24	DA	H2	H	8.02	0	1
145	1	24	DA	H2'	H	2.509	0.001	1
146	1	24	DA	H2''	H	2.656	0	1
147	1	24	DA	H3'	H	4.918	0.001	1
148	1	24	DA	H4'	H	4.387	0	1
149	1	24	DA	H8	H	8.128	0	1
150	1	25	DC	H1'	H	5.838	0	1
151	1	25	DC	H2'	H	1.238	0.001	1
152	1	25	DC	H2''	H	2.046	0	1
153	1	25	DC	H3'	H	4.681	0	1
154	1	25	DC	H4'	H	4.155	0	1
155	1	25	DC	H5	H	5.12	0	1
156	1	25	DC	H6	H	6.995	0.001	1
157	1	26	DG	H1'	H	5.882	0	1
158	1	26	DG	H2'	H	2.812	0.003	1
159	1	26	DG	H2''	H	2.581	0.001	1
160	1	26	DG	H3'	H	4.974	0	1
161	1	26	DG	H4'	H	4.412	0	1
162	1	26	DG	H8	H	8.031	0.001	1
163	1	27	DA	H1'	H	5.493	0.002	1
164	1	27	DA	H2	H	7.831	0.001	1
165	1	27	DA	H2'	H	1.117	0.001	1
166	1	27	DA	H2''	H	2.308	0	1
167	1	27	DA	H3'	H	4.703	0	1
168	1	27	DA	H4'	H	4.13	0.001	1
169	1	27	DA	H8	H	7.341	0.001	1
170	1	28	DG	H1'	H	5.369	0.002	1
171	1	28	DG	H2'	H	2.457	0	1
172	1	28	DG	H2''	H	2.457	0	1
173	1	28	DG	H3'	H	4.84	0	1
174	1	28	DG	H8	H	7.767	0	1
175	1	29	DC	H1'	H	5.943	0.001	1
176	1	29	DC	H2'	H	1.297	0	1
177	1	29	DC	H2''	H	2.036	0	1
178	1	29	DC	H3'	H	4.713	0.002	1
179	1	29	DC	H5	H	4.868	0	1
180	1	29	DC	H6	H	6.86	0	1
181	1	30	DG	H1'	H	5.911	0.001	1
182	1	30	DG	H2'	H	2.798	0.002	1
183	1	30	DG	H2''	H	2.609	0.001	1
184	1	30	DG	H3'	H	4.966	0	1
185	1	30	DG	H4'	H	4.453	0	1
186	1	30	DG	H8	H	8.077	0	1
187	1	31	DA	H1'	H	5.592	0.001	1
188	1	31	DA	H2	H	7.833	0	1
189	1	31	DA	H2'	H	0.994	0	1
190	1	31	DA	H2''	H	2.288	0	1
191	1	31	DA	H3'	H	4.723	0	1
192	1	31	DA	H4'	H	4.285	0.003	1
193	1	31	DA	H8	H	7.271	0.001	1
194	1	32	DG	H1'	H	5.368	0.001	1
195	1	32	DG	H2'	H	2.458	0.001	1
196	1	32	DG	H2''	H	2.458	0.001	1
197	1	32	DG	H3'	H	4.839	0	1
198	1	32	DG	H8	H	7.767	0	1
199	1	33	DC	H1'	H	5.944	0	1
200	1	33	DC	H2'	H	1.317	0.002	1
201	1	33	DC	H2''	H	2.05	0.004	1
202	1	33	DC	H3'	H	4.729	0	1
203	1	33	DC	H5	H	4.877	0	1
204	1	33	DC	H6	H	6.866	0	1
205	1	34	DG	H1'	H	5.947	0	1
206	1	34	DG	H2'	H	2.828	0	1
207	1	34	DG	H2''	H	2.636	0.001	1
208	1	34	DG	H3'	H	4.994	0	1
209	1	34	DG	H4'	H	4.475	0.002	1
210	1	34	DG	H8	H	8.101	0.001	1
211	1	35	DA	H1'	H	5.602	0	1
212	1	35	DA	H2	H	7.853	0.001	1
213	1	35	DA	H2'	H	1.02	0.003	1
214	1	35	DA	H2''	H	2.294	0.002	1
215	1	35	DA	H3'	H	4.744	0.002	1
216	1	35	DA	H4'	H	4.307	0.002	1
217	1	35	DA	H8	H	7.307	0.001	1
218	1	36	DG	H1'	H	5.476	0.001	1
219	1	36	DG	H2'	H	2.482	0.001	1
220	1	36	DG	H2''	H	2.526	0.003	1
221	1	36	DG	H3'	H	4.867	0.001	1
222	1	36	DG	H4'	H	4.299	0	1
223	1	36	DG	H8	H	7.798	0.001	1
224	1	37	DC	H1'	H	5.889	0	1
225	1	37	DC	H2'	H	1.481	0.001	1
226	1	37	DC	H2''	H	2.113	0.003	1
227	1	37	DC	H3'	H	4.713	0	1
228	1	37	DC	H4'	H	4.133	0	1
229	1	37	DC	H5	H	5.024	0.001	1
230	1	37	DC	H6	H	6.94	0.001	1
231	1	38	DG	H1'	H	5.619	0.001	1
232	1	38	DG	H2'	H	2.296	0	1
233	1	38	DG	H2''	H	2.601	0.001	1
234	1	38	DG	H3'	H	4.587	0	1
235	1	38	DG	H4'	H	4.213	0	1
236	1	38	DG	H8	H	7.941	0	1

Release date

2022-11-21

Citation

Structural polymorphism driven by a register shift in a CGAG-rich region found in the promoter of the neurodevelopmental regulator AUTS2 gene
Novotny, A., Plavec, J., Kocman, V.
Nucleic Acids Res. (2023), 51, 2602-2613, PubMed 36864756 , DOI 10.1093/nar/gkad117 , Abstract

Experiments performed 6 experiments Detail