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Structure of a symmetrical internal loop motif with three consecutive U:U mismatches from stem-loop 1 in the 3'-UTR of the SARS-CoV2 genomic RNA
Authors
Voegele, J., Duchardt-Ferner, E., Schwalbe, H., Woehnert, J.
Assembly
RNA (26-MER)
Entity
1. RNA (26-MER) (polymer, Thiol state: not present), 26 monomers, 8305.812 Da Detail

GGCGUUUUCG CUUCGGCGUU UACGCC


Formula weight
8305.812 Da
Source organism
Severe acute respiratory syndrome coronavirus 2
Exptl. method
solution NMR
Data set
assigned_chemical_shifts
Chemcal Shifts
1H: 128, 13C: 88, 15N: 23, 31P: 10 assignments Detail
IDEntity IDSeq IDComp IDAtom IDAtom typeValVal errAmbig. code
111GH1H12.9210.0201
212GH1H13.3910.0201
313CH41H6.8440.0201
414GH1H13.0010.0201
515UH1'H5.5550.0201
615UH2'H4.5470.0201
715UH3H14.5470.0201
815UH3'H4.2720.0201
915UH4'H4.4790.0201
1015UH5H5.1820.0202
1115UH5'H4.4920.0202
1215UH5''H4.0620.0202
1315UH6H7.5080.0201
1415UC1'C93.4300.31
1515UC2C152.7380.31
1615UC2'C75.2740.31
1715UC3'C72.0210.31
1815UC4C168.9050.31
1915UC4'C81.8760.31
2015UC5C102.9720.31
2115UC5'C64.4170.31
2215UC6C140.7800.31
2315UN1N146.2140.31
2415UN3N162.9950.31
2515UPP-1.2320.31
2615UHO2'H7.1510.0201
2716UH1'H5.2900.0201
2816UH2'H4.1730.0201
2916UH3H11.2130.0201
3016UH3'H4.4550.0201
3116UH4'H4.4450.0201
3216UH5H5.7100.0202
3316UH5'H4.4940.0202
3416UH5''H4.0670.0202
3516UH6H7.7860.0201
3616UC1'C94.1140.31
3716UC2C154.0420.31
3816UC2'C75.2630.31
3916UC3'C71.7070.31
4016UC4C166.9970.31
4116UC4'C82.3690.31
4216UC5C104.5610.31
4316UC5'C64.2350.31
4416UC6C140.9410.31
4516UN1N146.0310.31
4616UN3N157.6260.31
4716UPP-1.1560.31
4816UHO2'H6.8870.0201
4917UH1'H5.3430.0201
5017UH2'H4.1740.0201
5117UH3H11.4780.0201
5217UH3'H4.4780.0201
5317UH4'H4.3990.0201
5417UH5H5.7050.0202
5517UH5'H4.5010.0202
5617UH5''H4.0650.0202
5717UH6H7.9630.0201
5817UC1'C93.5460.31
5917UC2C153.3400.31
6017UC2'C75.2890.31
6117UC3'C71.9020.31
6217UC4C168.0930.31
6317UC4'C82.0230.31
6417UC5C103.2820.31
6517UC5'C64.2600.31
6617UC6C142.9050.31
6717UN1N147.7650.31
6817UN3N157.4940.31
6917UPP-1.5490.31
7017UHO2'H7.2140.0201
7118UH1'H5.6010.0201
7218UH2'H4.3660.0201
7318UH3H10.7220.0201
7418UH3'H4.4720.0201
7518UH4'H4.3800.0201
7618UH5H5.6510.0202
7718UH5'H4.5090.0202
7818UH5''H4.0820.0202
7918UH6H7.8360.0201
8018UC1'C94.1540.31
8118UC2C152.4960.31
8218UC2'C74.7390.31
8318UC3'C71.9150.31
8418UC4C169.1160.31
8518UC4'C82.1050.31
8618UC5C102.8670.31
8718UC5'C64.1550.31
8818UC6C143.1060.31
8918UN1N148.8100.31
9018UN3N157.1200.31
9118UPP-1.1930.31
9218UHO2'H6.8300.0201
9319CH5H5.9260.0201
9419CH6H8.0600.0201
9519CH41H7.3650.0201
9619CH42H8.4460.0201
97110GH1H12.7690.0201
98111CH41H7.0090.0201
99111CH42H8.6160.0201
100112UH1'H5.6620.0201
101112UH2'H3.7940.0201
102112UH3H11.7830.0201
103112UH3'H4.5510.0201
104112UH4'H4.3790.0201
105112UH5H5.7660.0202
106112UH5'H4.4900.0202
107112UH5''H4.0860.0202
108112UH6H7.7840.0201
109112UC1'C94.3810.31
110112UC2C153.0210.31
111112UC2'C75.8190.31
112112UC3'C72.9330.31
113112UC4C167.9470.31
114112UC4'C82.0290.31
115112UC5C104.7740.31
116112UC5'C63.8310.31
117112UC6C140.4290.31
118112UN1N146.8670.31
119112UN3N159.9280.31
120112UPP-1.2660.31
121112UHO2'H6.6700.0201
122113UH1'H6.1090.0201
123113UH2'H4.6770.0201
124113UH3'H4.0140.0201
125113UH4'H4.4880.0201
126113UH5H5.8650.0202
127113UH5'H4.2540.0202
128113UH5''H4.0450.0202
129113UH6H8.0240.0201
130113UC1'C88.9140.31
131113UC2C154.9340.31
132113UC2'C74.4870.31
133113UC3'C77.5800.31
134113UC4C168.8300.31
135113UC4'C86.7620.31
136113UC5C105.2790.31
137113UC5'C67.6620.31
138113UC6C144.4640.31
139113UN1N143.7520.31
140113UN3N158.1950.31
141113UPP-0.5280.31
142113UHO2'H6.6730.0201
143115GH1H9.9090.0201
144116GH1H13.4440.0201
145117CH41H6.8010.0201
146117CH42H8.6000.0201
147118GH1H13.1300.0201
148118GH2'H4.6640.0201
149118GH8H7.7070.0201
150118GH21H5.9660.0201
151118GH22H8.5960.0201
152119UH1'H5.4680.0201
153119UH2'H4.3580.0201
154119UH3H11.4060.0201
155119UH3'H4.4070.0201
156119UH4'H4.4150.0201
157119UH5H5.3140.0202
158119UH5'H4.5030.0202
159119UH5''H4.0780.0202
160119UH6H7.5590.0201
161119UC1'C93.6270.31
162119UC2C154.1450.31
163119UC2'C74.9930.31
164119UC3'C71.5750.31
165119UC4C166.4410.31
166119UC4'C82.0630.31
167119UC5C103.5470.31
168119UC5'C64.1710.31
169119UC6C140.1510.31
170119UN1N145.7750.31
171119UN3N158.4100.31
172119UPP-1.5970.31
173119UHO2'H6.8590.0201
174120UH1'H5.4220.0201
175120UH2'H4.1920.0201
176120UH3H11.3540.0201
177120UH3'H4.4800.0201
178120UH4'H4.4060.0201
179120UH5H5.7630.0202
180120UH5'H4.4990.0202
181120UH5''H4.0560.0202
182120UH6H7.9620.0201
183120UC1'C93.4370.31
184120UC2C153.9740.31
185120UC2'C75.4480.31
186120UC3'C71.9780.31
187120UC4C167.3840.31
188120UC4'C82.0480.31
189120UC5C104.1900.31
190120UC5'C64.1180.31
191120UC6C142.1570.31
192120UN1N147.0150.31
193120UN3N157.4820.31
194120UPP-1.2970.31
195120UHO2'H7.1380.0201
196121UH1'H5.5160.0201
197121UH2'H4.5010.0201
198121UH3H10.1290.0201
199121UH3'H4.4890.0201
200121UH4'H4.4140.0201
201121UH5H5.6770.0202
202121UH5'H4.4910.0202
203121UH5''H4.1150.0202
204121UH6H7.8370.0201
205121UC1'C94.0250.31
206121UC2C152.4900.31
207121UC2'C74.8430.31
208121UC3'C72.2180.31
209121UC4C168.8020.31
210121UC4'C82.0590.31
211121UC5C103.3850.31
212121UC5'C65.0650.31
213121UC6C142.8230.31
214121UN1N147.9130.31
215121UN3N155.7710.31
216121UPP-1.0650.31
217121UHO2'H6.9060.0201
218122AH1'H6.0390.0201
219122AH2H8.0160.0201
220122AH2'H4.6560.0201
221122AH3'H4.7050.0201
222122AH4'H4.5110.0201
223122AH5'H4.5130.0202
224122AH5''H4.1570.0202
225122AH8H8.2410.0201
226122AH61H6.8100.0201
227122AH62H7.6820.0201
228122AC1'C91.6960.31
229122AC2C153.4610.31
230122AC2'C75.5930.31
231122AC3'C73.3030.31
232122AC4'C82.0880.31
233122AC5'C65.0920.31
234122AC8C139.8540.31
235122AN1N222.2680.31
236122AN3N214.1480.31
237122AN6N83.1220.31
238122AN7N230.9480.31
239122AN9N171.3410.31
240122APP-0.9970.31
241123CH1'H5.4610.0201
242123CH6H7.3080.0201
243123CH41H6.9070.0201
244123CH42H8.5280.0201
245124GH1H12.9950.0201
246125CH41H6.9550.0201
247125CH42H8.5990.0201
248126CH41H7.1560.0201
249126CH42H8.5930.0201

Release date
2023-01-04
Citation
Structure of a symmetrical internal loop motif with three consecutive U:U mismatches from stem-loop 1 in the 3'-UTR of the SARS-CoV2 genomic RNA
Voegele, J., Duchardt-Ferner, E., Bains, J.K., Knezic, B., Wacker, A., Sich, C., Goerlach, M., Weigand, J., Sponer, J., Krepl, M., Schwalbe, H., Woehnert, J.
Experiments performed 19 experiments Detail
Chemical shift validation 3 contents Detail
Keywords 3'-UTR, RNA, RNA structure, SARS-CoV-2, U:U mismatch