In response to the declaration of global pandemic of Coronavirus infectious disease 2019 (COVID-19) caused by Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), we provide comprehensive content on Coronavirus molecular structures and its interactions:
Structure of a symmetrical internal loop motif with three consecutive U:U mismatches from stem-loop 1 in the 3'-UTR of the SARS-CoV2 genomic RNA
ID | Entity ID | Seq ID | Comp ID | Atom ID | Atom type | Val | Val err | Ambig. code |
---|---|---|---|---|---|---|---|---|
1 | 1 | 1 | G | H1 | H | 12.921 | 0.020 | 1 |
2 | 1 | 2 | G | H1 | H | 13.391 | 0.020 | 1 |
3 | 1 | 3 | C | H41 | H | 6.844 | 0.020 | 1 |
4 | 1 | 4 | G | H1 | H | 13.001 | 0.020 | 1 |
5 | 1 | 5 | U | H1' | H | 5.555 | 0.020 | 1 |
6 | 1 | 5 | U | H2' | H | 4.547 | 0.020 | 1 |
7 | 1 | 5 | U | H3 | H | 14.547 | 0.020 | 1 |
8 | 1 | 5 | U | H3' | H | 4.272 | 0.020 | 1 |
9 | 1 | 5 | U | H4' | H | 4.479 | 0.020 | 1 |
10 | 1 | 5 | U | H5 | H | 5.182 | 0.020 | 2 |
11 | 1 | 5 | U | H5' | H | 4.492 | 0.020 | 2 |
12 | 1 | 5 | U | H5'' | H | 4.062 | 0.020 | 2 |
13 | 1 | 5 | U | H6 | H | 7.508 | 0.020 | 1 |
14 | 1 | 5 | U | C1' | C | 93.430 | 0.3 | 1 |
15 | 1 | 5 | U | C2 | C | 152.738 | 0.3 | 1 |
16 | 1 | 5 | U | C2' | C | 75.274 | 0.3 | 1 |
17 | 1 | 5 | U | C3' | C | 72.021 | 0.3 | 1 |
18 | 1 | 5 | U | C4 | C | 168.905 | 0.3 | 1 |
19 | 1 | 5 | U | C4' | C | 81.876 | 0.3 | 1 |
20 | 1 | 5 | U | C5 | C | 102.972 | 0.3 | 1 |
21 | 1 | 5 | U | C5' | C | 64.417 | 0.3 | 1 |
22 | 1 | 5 | U | C6 | C | 140.780 | 0.3 | 1 |
23 | 1 | 5 | U | N1 | N | 146.214 | 0.3 | 1 |
24 | 1 | 5 | U | N3 | N | 162.995 | 0.3 | 1 |
25 | 1 | 5 | U | P | P | -1.232 | 0.3 | 1 |
26 | 1 | 5 | U | HO2' | H | 7.151 | 0.020 | 1 |
27 | 1 | 6 | U | H1' | H | 5.290 | 0.020 | 1 |
28 | 1 | 6 | U | H2' | H | 4.173 | 0.020 | 1 |
29 | 1 | 6 | U | H3 | H | 11.213 | 0.020 | 1 |
30 | 1 | 6 | U | H3' | H | 4.455 | 0.020 | 1 |
31 | 1 | 6 | U | H4' | H | 4.445 | 0.020 | 1 |
32 | 1 | 6 | U | H5 | H | 5.710 | 0.020 | 2 |
33 | 1 | 6 | U | H5' | H | 4.494 | 0.020 | 2 |
34 | 1 | 6 | U | H5'' | H | 4.067 | 0.020 | 2 |
35 | 1 | 6 | U | H6 | H | 7.786 | 0.020 | 1 |
36 | 1 | 6 | U | C1' | C | 94.114 | 0.3 | 1 |
37 | 1 | 6 | U | C2 | C | 154.042 | 0.3 | 1 |
38 | 1 | 6 | U | C2' | C | 75.263 | 0.3 | 1 |
39 | 1 | 6 | U | C3' | C | 71.707 | 0.3 | 1 |
40 | 1 | 6 | U | C4 | C | 166.997 | 0.3 | 1 |
41 | 1 | 6 | U | C4' | C | 82.369 | 0.3 | 1 |
42 | 1 | 6 | U | C5 | C | 104.561 | 0.3 | 1 |
43 | 1 | 6 | U | C5' | C | 64.235 | 0.3 | 1 |
44 | 1 | 6 | U | C6 | C | 140.941 | 0.3 | 1 |
45 | 1 | 6 | U | N1 | N | 146.031 | 0.3 | 1 |
46 | 1 | 6 | U | N3 | N | 157.626 | 0.3 | 1 |
47 | 1 | 6 | U | P | P | -1.156 | 0.3 | 1 |
48 | 1 | 6 | U | HO2' | H | 6.887 | 0.020 | 1 |
49 | 1 | 7 | U | H1' | H | 5.343 | 0.020 | 1 |
50 | 1 | 7 | U | H2' | H | 4.174 | 0.020 | 1 |
51 | 1 | 7 | U | H3 | H | 11.478 | 0.020 | 1 |
52 | 1 | 7 | U | H3' | H | 4.478 | 0.020 | 1 |
53 | 1 | 7 | U | H4' | H | 4.399 | 0.020 | 1 |
54 | 1 | 7 | U | H5 | H | 5.705 | 0.020 | 2 |
55 | 1 | 7 | U | H5' | H | 4.501 | 0.020 | 2 |
56 | 1 | 7 | U | H5'' | H | 4.065 | 0.020 | 2 |
57 | 1 | 7 | U | H6 | H | 7.963 | 0.020 | 1 |
58 | 1 | 7 | U | C1' | C | 93.546 | 0.3 | 1 |
59 | 1 | 7 | U | C2 | C | 153.340 | 0.3 | 1 |
60 | 1 | 7 | U | C2' | C | 75.289 | 0.3 | 1 |
61 | 1 | 7 | U | C3' | C | 71.902 | 0.3 | 1 |
62 | 1 | 7 | U | C4 | C | 168.093 | 0.3 | 1 |
63 | 1 | 7 | U | C4' | C | 82.023 | 0.3 | 1 |
64 | 1 | 7 | U | C5 | C | 103.282 | 0.3 | 1 |
65 | 1 | 7 | U | C5' | C | 64.260 | 0.3 | 1 |
66 | 1 | 7 | U | C6 | C | 142.905 | 0.3 | 1 |
67 | 1 | 7 | U | N1 | N | 147.765 | 0.3 | 1 |
68 | 1 | 7 | U | N3 | N | 157.494 | 0.3 | 1 |
69 | 1 | 7 | U | P | P | -1.549 | 0.3 | 1 |
70 | 1 | 7 | U | HO2' | H | 7.214 | 0.020 | 1 |
71 | 1 | 8 | U | H1' | H | 5.601 | 0.020 | 1 |
72 | 1 | 8 | U | H2' | H | 4.366 | 0.020 | 1 |
73 | 1 | 8 | U | H3 | H | 10.722 | 0.020 | 1 |
74 | 1 | 8 | U | H3' | H | 4.472 | 0.020 | 1 |
75 | 1 | 8 | U | H4' | H | 4.380 | 0.020 | 1 |
76 | 1 | 8 | U | H5 | H | 5.651 | 0.020 | 2 |
77 | 1 | 8 | U | H5' | H | 4.509 | 0.020 | 2 |
78 | 1 | 8 | U | H5'' | H | 4.082 | 0.020 | 2 |
79 | 1 | 8 | U | H6 | H | 7.836 | 0.020 | 1 |
80 | 1 | 8 | U | C1' | C | 94.154 | 0.3 | 1 |
81 | 1 | 8 | U | C2 | C | 152.496 | 0.3 | 1 |
82 | 1 | 8 | U | C2' | C | 74.739 | 0.3 | 1 |
83 | 1 | 8 | U | C3' | C | 71.915 | 0.3 | 1 |
84 | 1 | 8 | U | C4 | C | 169.116 | 0.3 | 1 |
85 | 1 | 8 | U | C4' | C | 82.105 | 0.3 | 1 |
86 | 1 | 8 | U | C5 | C | 102.867 | 0.3 | 1 |
87 | 1 | 8 | U | C5' | C | 64.155 | 0.3 | 1 |
88 | 1 | 8 | U | C6 | C | 143.106 | 0.3 | 1 |
89 | 1 | 8 | U | N1 | N | 148.810 | 0.3 | 1 |
90 | 1 | 8 | U | N3 | N | 157.120 | 0.3 | 1 |
91 | 1 | 8 | U | P | P | -1.193 | 0.3 | 1 |
92 | 1 | 8 | U | HO2' | H | 6.830 | 0.020 | 1 |
93 | 1 | 9 | C | H5 | H | 5.926 | 0.020 | 1 |
94 | 1 | 9 | C | H6 | H | 8.060 | 0.020 | 1 |
95 | 1 | 9 | C | H41 | H | 7.365 | 0.020 | 1 |
96 | 1 | 9 | C | H42 | H | 8.446 | 0.020 | 1 |
97 | 1 | 10 | G | H1 | H | 12.769 | 0.020 | 1 |
98 | 1 | 11 | C | H41 | H | 7.009 | 0.020 | 1 |
99 | 1 | 11 | C | H42 | H | 8.616 | 0.020 | 1 |
100 | 1 | 12 | U | H1' | H | 5.662 | 0.020 | 1 |
101 | 1 | 12 | U | H2' | H | 3.794 | 0.020 | 1 |
102 | 1 | 12 | U | H3 | H | 11.783 | 0.020 | 1 |
103 | 1 | 12 | U | H3' | H | 4.551 | 0.020 | 1 |
104 | 1 | 12 | U | H4' | H | 4.379 | 0.020 | 1 |
105 | 1 | 12 | U | H5 | H | 5.766 | 0.020 | 2 |
106 | 1 | 12 | U | H5' | H | 4.490 | 0.020 | 2 |
107 | 1 | 12 | U | H5'' | H | 4.086 | 0.020 | 2 |
108 | 1 | 12 | U | H6 | H | 7.784 | 0.020 | 1 |
109 | 1 | 12 | U | C1' | C | 94.381 | 0.3 | 1 |
110 | 1 | 12 | U | C2 | C | 153.021 | 0.3 | 1 |
111 | 1 | 12 | U | C2' | C | 75.819 | 0.3 | 1 |
112 | 1 | 12 | U | C3' | C | 72.933 | 0.3 | 1 |
113 | 1 | 12 | U | C4 | C | 167.947 | 0.3 | 1 |
114 | 1 | 12 | U | C4' | C | 82.029 | 0.3 | 1 |
115 | 1 | 12 | U | C5 | C | 104.774 | 0.3 | 1 |
116 | 1 | 12 | U | C5' | C | 63.831 | 0.3 | 1 |
117 | 1 | 12 | U | C6 | C | 140.429 | 0.3 | 1 |
118 | 1 | 12 | U | N1 | N | 146.867 | 0.3 | 1 |
119 | 1 | 12 | U | N3 | N | 159.928 | 0.3 | 1 |
120 | 1 | 12 | U | P | P | -1.266 | 0.3 | 1 |
121 | 1 | 12 | U | HO2' | H | 6.670 | 0.020 | 1 |
122 | 1 | 13 | U | H1' | H | 6.109 | 0.020 | 1 |
123 | 1 | 13 | U | H2' | H | 4.677 | 0.020 | 1 |
124 | 1 | 13 | U | H3' | H | 4.014 | 0.020 | 1 |
125 | 1 | 13 | U | H4' | H | 4.488 | 0.020 | 1 |
126 | 1 | 13 | U | H5 | H | 5.865 | 0.020 | 2 |
127 | 1 | 13 | U | H5' | H | 4.254 | 0.020 | 2 |
128 | 1 | 13 | U | H5'' | H | 4.045 | 0.020 | 2 |
129 | 1 | 13 | U | H6 | H | 8.024 | 0.020 | 1 |
130 | 1 | 13 | U | C1' | C | 88.914 | 0.3 | 1 |
131 | 1 | 13 | U | C2 | C | 154.934 | 0.3 | 1 |
132 | 1 | 13 | U | C2' | C | 74.487 | 0.3 | 1 |
133 | 1 | 13 | U | C3' | C | 77.580 | 0.3 | 1 |
134 | 1 | 13 | U | C4 | C | 168.830 | 0.3 | 1 |
135 | 1 | 13 | U | C4' | C | 86.762 | 0.3 | 1 |
136 | 1 | 13 | U | C5 | C | 105.279 | 0.3 | 1 |
137 | 1 | 13 | U | C5' | C | 67.662 | 0.3 | 1 |
138 | 1 | 13 | U | C6 | C | 144.464 | 0.3 | 1 |
139 | 1 | 13 | U | N1 | N | 143.752 | 0.3 | 1 |
140 | 1 | 13 | U | N3 | N | 158.195 | 0.3 | 1 |
141 | 1 | 13 | U | P | P | -0.528 | 0.3 | 1 |
142 | 1 | 13 | U | HO2' | H | 6.673 | 0.020 | 1 |
143 | 1 | 15 | G | H1 | H | 9.909 | 0.020 | 1 |
144 | 1 | 16 | G | H1 | H | 13.444 | 0.020 | 1 |
145 | 1 | 17 | C | H41 | H | 6.801 | 0.020 | 1 |
146 | 1 | 17 | C | H42 | H | 8.600 | 0.020 | 1 |
147 | 1 | 18 | G | H1 | H | 13.130 | 0.020 | 1 |
148 | 1 | 18 | G | H2' | H | 4.664 | 0.020 | 1 |
149 | 1 | 18 | G | H8 | H | 7.707 | 0.020 | 1 |
150 | 1 | 18 | G | H21 | H | 5.966 | 0.020 | 1 |
151 | 1 | 18 | G | H22 | H | 8.596 | 0.020 | 1 |
152 | 1 | 19 | U | H1' | H | 5.468 | 0.020 | 1 |
153 | 1 | 19 | U | H2' | H | 4.358 | 0.020 | 1 |
154 | 1 | 19 | U | H3 | H | 11.406 | 0.020 | 1 |
155 | 1 | 19 | U | H3' | H | 4.407 | 0.020 | 1 |
156 | 1 | 19 | U | H4' | H | 4.415 | 0.020 | 1 |
157 | 1 | 19 | U | H5 | H | 5.314 | 0.020 | 2 |
158 | 1 | 19 | U | H5' | H | 4.503 | 0.020 | 2 |
159 | 1 | 19 | U | H5'' | H | 4.078 | 0.020 | 2 |
160 | 1 | 19 | U | H6 | H | 7.559 | 0.020 | 1 |
161 | 1 | 19 | U | C1' | C | 93.627 | 0.3 | 1 |
162 | 1 | 19 | U | C2 | C | 154.145 | 0.3 | 1 |
163 | 1 | 19 | U | C2' | C | 74.993 | 0.3 | 1 |
164 | 1 | 19 | U | C3' | C | 71.575 | 0.3 | 1 |
165 | 1 | 19 | U | C4 | C | 166.441 | 0.3 | 1 |
166 | 1 | 19 | U | C4' | C | 82.063 | 0.3 | 1 |
167 | 1 | 19 | U | C5 | C | 103.547 | 0.3 | 1 |
168 | 1 | 19 | U | C5' | C | 64.171 | 0.3 | 1 |
169 | 1 | 19 | U | C6 | C | 140.151 | 0.3 | 1 |
170 | 1 | 19 | U | N1 | N | 145.775 | 0.3 | 1 |
171 | 1 | 19 | U | N3 | N | 158.410 | 0.3 | 1 |
172 | 1 | 19 | U | P | P | -1.597 | 0.3 | 1 |
173 | 1 | 19 | U | HO2' | H | 6.859 | 0.020 | 1 |
174 | 1 | 20 | U | H1' | H | 5.422 | 0.020 | 1 |
175 | 1 | 20 | U | H2' | H | 4.192 | 0.020 | 1 |
176 | 1 | 20 | U | H3 | H | 11.354 | 0.020 | 1 |
177 | 1 | 20 | U | H3' | H | 4.480 | 0.020 | 1 |
178 | 1 | 20 | U | H4' | H | 4.406 | 0.020 | 1 |
179 | 1 | 20 | U | H5 | H | 5.763 | 0.020 | 2 |
180 | 1 | 20 | U | H5' | H | 4.499 | 0.020 | 2 |
181 | 1 | 20 | U | H5'' | H | 4.056 | 0.020 | 2 |
182 | 1 | 20 | U | H6 | H | 7.962 | 0.020 | 1 |
183 | 1 | 20 | U | C1' | C | 93.437 | 0.3 | 1 |
184 | 1 | 20 | U | C2 | C | 153.974 | 0.3 | 1 |
185 | 1 | 20 | U | C2' | C | 75.448 | 0.3 | 1 |
186 | 1 | 20 | U | C3' | C | 71.978 | 0.3 | 1 |
187 | 1 | 20 | U | C4 | C | 167.384 | 0.3 | 1 |
188 | 1 | 20 | U | C4' | C | 82.048 | 0.3 | 1 |
189 | 1 | 20 | U | C5 | C | 104.190 | 0.3 | 1 |
190 | 1 | 20 | U | C5' | C | 64.118 | 0.3 | 1 |
191 | 1 | 20 | U | C6 | C | 142.157 | 0.3 | 1 |
192 | 1 | 20 | U | N1 | N | 147.015 | 0.3 | 1 |
193 | 1 | 20 | U | N3 | N | 157.482 | 0.3 | 1 |
194 | 1 | 20 | U | P | P | -1.297 | 0.3 | 1 |
195 | 1 | 20 | U | HO2' | H | 7.138 | 0.020 | 1 |
196 | 1 | 21 | U | H1' | H | 5.516 | 0.020 | 1 |
197 | 1 | 21 | U | H2' | H | 4.501 | 0.020 | 1 |
198 | 1 | 21 | U | H3 | H | 10.129 | 0.020 | 1 |
199 | 1 | 21 | U | H3' | H | 4.489 | 0.020 | 1 |
200 | 1 | 21 | U | H4' | H | 4.414 | 0.020 | 1 |
201 | 1 | 21 | U | H5 | H | 5.677 | 0.020 | 2 |
202 | 1 | 21 | U | H5' | H | 4.491 | 0.020 | 2 |
203 | 1 | 21 | U | H5'' | H | 4.115 | 0.020 | 2 |
204 | 1 | 21 | U | H6 | H | 7.837 | 0.020 | 1 |
205 | 1 | 21 | U | C1' | C | 94.025 | 0.3 | 1 |
206 | 1 | 21 | U | C2 | C | 152.490 | 0.3 | 1 |
207 | 1 | 21 | U | C2' | C | 74.843 | 0.3 | 1 |
208 | 1 | 21 | U | C3' | C | 72.218 | 0.3 | 1 |
209 | 1 | 21 | U | C4 | C | 168.802 | 0.3 | 1 |
210 | 1 | 21 | U | C4' | C | 82.059 | 0.3 | 1 |
211 | 1 | 21 | U | C5 | C | 103.385 | 0.3 | 1 |
212 | 1 | 21 | U | C5' | C | 65.065 | 0.3 | 1 |
213 | 1 | 21 | U | C6 | C | 142.823 | 0.3 | 1 |
214 | 1 | 21 | U | N1 | N | 147.913 | 0.3 | 1 |
215 | 1 | 21 | U | N3 | N | 155.771 | 0.3 | 1 |
216 | 1 | 21 | U | P | P | -1.065 | 0.3 | 1 |
217 | 1 | 21 | U | HO2' | H | 6.906 | 0.020 | 1 |
218 | 1 | 22 | A | H1' | H | 6.039 | 0.020 | 1 |
219 | 1 | 22 | A | H2 | H | 8.016 | 0.020 | 1 |
220 | 1 | 22 | A | H2' | H | 4.656 | 0.020 | 1 |
221 | 1 | 22 | A | H3' | H | 4.705 | 0.020 | 1 |
222 | 1 | 22 | A | H4' | H | 4.511 | 0.020 | 1 |
223 | 1 | 22 | A | H5' | H | 4.513 | 0.020 | 2 |
224 | 1 | 22 | A | H5'' | H | 4.157 | 0.020 | 2 |
225 | 1 | 22 | A | H8 | H | 8.241 | 0.020 | 1 |
226 | 1 | 22 | A | H61 | H | 6.810 | 0.020 | 1 |
227 | 1 | 22 | A | H62 | H | 7.682 | 0.020 | 1 |
228 | 1 | 22 | A | C1' | C | 91.696 | 0.3 | 1 |
229 | 1 | 22 | A | C2 | C | 153.461 | 0.3 | 1 |
230 | 1 | 22 | A | C2' | C | 75.593 | 0.3 | 1 |
231 | 1 | 22 | A | C3' | C | 73.303 | 0.3 | 1 |
232 | 1 | 22 | A | C4' | C | 82.088 | 0.3 | 1 |
233 | 1 | 22 | A | C5' | C | 65.092 | 0.3 | 1 |
234 | 1 | 22 | A | C8 | C | 139.854 | 0.3 | 1 |
235 | 1 | 22 | A | N1 | N | 222.268 | 0.3 | 1 |
236 | 1 | 22 | A | N3 | N | 214.148 | 0.3 | 1 |
237 | 1 | 22 | A | N6 | N | 83.122 | 0.3 | 1 |
238 | 1 | 22 | A | N7 | N | 230.948 | 0.3 | 1 |
239 | 1 | 22 | A | N9 | N | 171.341 | 0.3 | 1 |
240 | 1 | 22 | A | P | P | -0.997 | 0.3 | 1 |
241 | 1 | 23 | C | H1' | H | 5.461 | 0.020 | 1 |
242 | 1 | 23 | C | H6 | H | 7.308 | 0.020 | 1 |
243 | 1 | 23 | C | H41 | H | 6.907 | 0.020 | 1 |
244 | 1 | 23 | C | H42 | H | 8.528 | 0.020 | 1 |
245 | 1 | 24 | G | H1 | H | 12.995 | 0.020 | 1 |
246 | 1 | 25 | C | H41 | H | 6.955 | 0.020 | 1 |
247 | 1 | 25 | C | H42 | H | 8.599 | 0.020 | 1 |
248 | 1 | 26 | C | H41 | H | 7.156 | 0.020 | 1 |
249 | 1 | 26 | C | H42 | H | 8.593 | 0.020 | 1 |