BMRB: 34780

Tetra-stranded double-ion dependent DNA (diDNA) NMR structure of telomeric C.elegans fragment

Authors

Lenarcic Zivkovic, M., Trantirek, L.

Assembly

DNA (5'-D(*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*C)-3')

Entity

1. DNA (5'-D(*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*C)-3') (polymer, Thiol state: not present), 21 monomers, 6573.164 Da Detail

GGCTTAGGCT TAGGCTTAGG C

Formula weight

6573.164 Da

Source organism

Caenorhabditis elegans

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chemcal Shifts

¹H: 207 assignments Detail

Download

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• BMRB/XML (partial)
• CSV
• TSV

ID	Entity ID	Seq ID	Comp ID	Atom ID	Atom type	Val	Val err	Ambig. code
1	1	1	DG	H1	H	12.73	0.003
2	1	1	DG	H1'	H	6.04	0.003
3	1	1	DG	H2'	H	2.50	0.002
4	1	1	DG	H2''	H	2.95	0.001
5	1	1	DG	H3'	H	4.94	0.002
6	1	1	DG	H4'	H	4.25	0.001
7	1	1	DG	H5'	H	3.76	0.002
8	1	1	DG	H5''	H	3.73	0.002
9	1	1	DG	H8	H	7.92	0.003
10	1	2	DG	H1	H	11.25	0.003
11	1	2	DG	H1'	H	5.71	0.001
12	1	2	DG	H2'	H	2.68	0.001
13	1	2	DG	H2''	H	2.47	0.002
14	1	2	DG	H3'	H	5.00	0.003
15	1	2	DG	H4'	H	4.40	0.003
16	1	2	DG	H5'	H	4.20	0.001
17	1	2	DG	H5''	H	4.20	0.001
18	1	2	DG	H8	H	8.05	0.003
19	1	3	DC	H1'	H	6.38	0.002
20	1	3	DC	H2'	H	2.45	0.003
21	1	3	DC	H2''	H	2.53	0.003
22	1	3	DC	H3'	H	4.92	0.002
23	1	3	DC	H4'	H	4.32	0.002
24	1	3	DC	H5	H	5.36	0.002
25	1	3	DC	H5'	H	4.17	0.001
26	1	3	DC	H5''	H	4.24	0.002
27	1	3	DC	H6	H	7.54	0.001
28	1	3	DC	H41	H	8.49	0.002
29	1	3	DC	H42	H	7.38	0.002
30	1	4	DT	H1'	H	6.28	0.004
31	1	4	DT	H2'	H	2.26	0.003
32	1	4	DT	H2''	H	2.55	0.004
33	1	4	DT	H3'	H	4.85	0.002
34	1	4	DT	H4'	H	4.39	0.002
35	1	4	DT	H5'	H	4.22	0.003
36	1	4	DT	H5''	H	4.10	0.003
37	1	4	DT	H6	H	7.84	0.003
38	1	4	DT	H71	H	2.00	0.001
39	1	4	DT	H72	H	2.00	0.001
40	1	4	DT	H73	H	2.00	0.001
41	1	5	DT	H1'	H	5.77	0.001
42	1	5	DT	H2'	H	1.05	0.001
43	1	5	DT	H2''	H	1.62	0.003
44	1	5	DT	H3'	H	4.55	0.003
45	1	5	DT	H4'	H	4.09	0.001
46	1	5	DT	H5'	H	3.88	0.001
47	1	5	DT	H5''	H	4.09	0.001
48	1	5	DT	H6	H	7.32	0.001
49	1	5	DT	H71	H	1.81	0.002
50	1	5	DT	H72	H	1.81	0.002
51	1	5	DT	H73	H	1.81	0.002
52	1	6	DA	H1'	H	6.16	0.003
53	1	6	DA	H2	H	7.45	0.004
54	1	6	DA	H2'	H	2.74	0.003
55	1	6	DA	H2''	H	2.64	0.003
56	1	6	DA	H3'	H	5.10	0.003
57	1	6	DA	H4'	H	4.17	0.001
58	1	6	DA	H5'	H	3.92	0.004
59	1	6	DA	H5''	H	3.83	0.003
60	1	6	DA	H8	H	8.02	0.002
61	1	6	DA	H61	H	6.50	0.002
62	1	6	DA	H62	H	8.05	0.002
63	1	7	DG	H1	H	12.77	0.002
64	1	7	DG	H1'	H	5.97	0.002
65	1	7	DG	H2'	H	2.70	0.004
66	1	7	DG	H2''	H	3.25	0.004
67	1	7	DG	H3'	H	5.00	0.002
68	1	7	DG	H4'	H	4.40	0.001
69	1	7	DG	H5'	H	4.05	0.003
70	1	7	DG	H5''	H	3.93	0.003
71	1	7	DG	H8	H	7.98	0.002
72	1	8	DG	H1	H	11.16	0.002
73	1	8	DG	H1'	H	5.99	0.003
74	1	8	DG	H2'	H	3.35	0.001
75	1	8	DG	H2''	H	2.71	0.002
76	1	8	DG	H3'	H	4.96	0.002
77	1	8	DG	H4'	H	4.43	0.002
78	1	8	DG	H5'	H	4.28	0.003
79	1	8	DG	H5''	H	4.23	0.001
80	1	8	DG	H8	H	7.60	0.003
81	1	8	DG	H21	H	9.69	0.003
82	1	8	DG	H22	H	7.42	0.002
83	1	9	DC	H1'	H	6.02	0.003
84	1	9	DC	H2'	H	1.90	0.003
85	1	9	DC	H2''	H	2.38	0.003
86	1	9	DC	H3'	H	4.75	0.004
87	1	9	DC	H4'	H	4.19	0.001
88	1	9	DC	H5	H	5.21	0.002
89	1	9	DC	H5'	H	4.03	0.003
90	1	9	DC	H5''	H	3.96	0.001
91	1	9	DC	H6	H	7.04	0.001
92	1	9	DC	H41	H	8.23	0.001
93	1	9	DC	H42	H	8.97	0.001
94	1	10	DT	H1'	H	6.06	0.003
95	1	10	DT	H2'	H	2.18	0.004
96	1	10	DT	H2''	H	2.44	0.003
97	1	10	DT	H3'	H	4.67	0.004
98	1	10	DT	H5'	H	3.96	0.002
99	1	10	DT	H5''	H	4.15	0.004
100	1	10	DT	H6	H	7.50	0.003
101	1	10	DT	H71	H	1.67	0.000
102	1	10	DT	H72	H	1.67	0.000
103	1	10	DT	H73	H	1.67	0.000
104	1	11	DT	H1'	H	5.45	0.002
105	1	11	DT	H2'	H	1.71	0.001
106	1	11	DT	H2''	H	2.17	0.002
107	1	11	DT	H3'	H	4.42	0.001
108	1	11	DT	H4'	H	4.01	0.001
109	1	11	DT	H5'	H	3.73	0.001
110	1	11	DT	H5''	H	4.01	0.004
111	1	11	DT	H6	H	7.23	0.003
112	1	11	DT	H71	H	1.61	0.001
113	1	11	DT	H72	H	1.61	0.001
114	1	11	DT	H73	H	1.61	0.001
115	1	12	DA	H1'	H	5.36	0.001
116	1	12	DA	H2'	H	1.92	0.001
117	1	12	DA	H2''	H	2.37	0.002
118	1	12	DA	H3'	H	4.62	0.004
119	1	12	DA	H4'	H	4.06	0.001
120	1	12	DA	H5'	H	3.58	0.001
121	1	12	DA	H5''	H	3.17	0.001
122	1	12	DA	H8	H	7.32	0.004
123	1	13	DG	H1	H	13.47	0.001
124	1	13	DG	H1'	H	6.09	0.001
125	1	13	DG	H2'	H	2.69	0.004
126	1	13	DG	H2''	H	3.02	0.001
127	1	13	DG	H3'	H	4.92	0.002
128	1	13	DG	H4'	H	4.39	0.004
129	1	13	DG	H5'	H	3.87	0.002
130	1	13	DG	H5''	H	4.05	0.002
131	1	13	DG	H8	H	8.10	0.002
132	1	14	DG	H1	H	11.26	0.004
133	1	14	DG	H1'	H	5.74	0.001
134	1	14	DG	H2'	H	2.68	0.003
135	1	14	DG	H2''	H	2.47	0.002
136	1	14	DG	H3'	H	5.00	0.001
137	1	14	DG	H4'	H	4.41	0.001
138	1	14	DG	H5'	H	4.20	0.000
139	1	14	DG	H8	H	8.02	0.001
140	1	15	DC	H1'	H	6.37	0.002
141	1	15	DC	H2'	H	2.47	0.004
142	1	15	DC	H2''	H	2.54	0.004
143	1	15	DC	H3'	H	4.90	0.004
144	1	15	DC	H4'	H	4.31	0.002
145	1	15	DC	H5	H	5.33	0.002
146	1	15	DC	H5'	H	4.16	0.002
147	1	15	DC	H5''	H	4.26	0.000
148	1	15	DC	H6	H	7.52	0.002
149	1	15	DC	H41	H	8.52	0.004
150	1	15	DC	H42	H	7.38	0.003
151	1	16	DT	H1'	H	6.27	0.002
152	1	16	DT	H2'	H	2.27	0.000
153	1	16	DT	H2''	H	2.55	0.003
154	1	16	DT	H3'	H	4.84	0.001
155	1	16	DT	H4'	H	4.39	0.000
156	1	16	DT	H5'	H	4.21	0.000
157	1	16	DT	H5''	H	4.09	0.000
158	1	16	DT	H6	H	7.84	0.001
159	1	16	DT	H71	H	1.99	0.004
160	1	16	DT	H72	H	1.99	0.004
161	1	16	DT	H73	H	1.99	0.004
162	1	17	DT	H2'	H	1.05	0.001
163	1	17	DT	H2''	H	1.62	0.003
164	1	17	DT	H3'	H	4.55	0.000
165	1	17	DT	H6	H	7.32	0.001
166	1	17	DT	H71	H	1.81	0.002
167	1	17	DT	H72	H	1.81	0.002
168	1	17	DT	H73	H	1.81	0.002
169	1	18	DA	H1'	H	6.16	0.003
170	1	18	DA	H2	H	7.45	0.004
171	1	18	DA	H2'	H	2.75	0.004
172	1	18	DA	H2''	H	2.65	0.003
173	1	18	DA	H3'	H	5.12	0.002
174	1	18	DA	H4'	H	4.17	0.001
175	1	18	DA	H5'	H	3.92	0.002
176	1	18	DA	H5''	H	3.83	0.002
177	1	18	DA	H8	H	8.06	0.002
178	1	18	DA	H61	H	6.44	0.002
179	1	18	DA	H62	H	8.03	0.000
180	1	19	DG	H1	H	12.77	0.004
181	1	19	DG	H1'	H	5.96	0.002
182	1	19	DG	H2'	H	2.71	0.004
183	1	19	DG	H2''	H	3.25	0.004
184	1	19	DG	H3'	H	5.00	0.002
185	1	19	DG	H5'	H	4.05	0.002
186	1	19	DG	H5''	H	3.94	0.000
187	1	19	DG	H8	H	8.00	0.002
188	1	20	DG	H1	H	11.18	0.003
189	1	20	DG	H1'	H	5.99	0.002
190	1	20	DG	H2'	H	3.39	0.001
191	1	20	DG	H2''	H	2.77	0.001
192	1	20	DG	H3'	H	4.98	0.002
193	1	20	DG	H4'	H	4.43	0.001
194	1	20	DG	H5'	H	4.29	0.003
195	1	20	DG	H5''	H	4.23	0.002
196	1	20	DG	H8	H	7.59	0.003
197	1	20	DG	H21	H	9.80	0.001
198	1	20	DG	H22	H	7.50	0.002
199	1	21	DC	H1'	H	6.18	0.001
200	1	21	DC	H2'	H	2.16	0.001
201	1	21	DC	H2''	H	2.16	0.003
202	1	21	DC	H3'	H	4.54	0.004
203	1	21	DC	H4'	H	4.03	0.001
204	1	21	DC	H5	H	5.31	0.004
205	1	21	DC	H6	H	7.31	0.003
206	1	21	DC	H41	H	7.69	0.001
207	1	21	DC	H42	H	8.75	0.001

Release date

2023-01-09

Citation

Tetra-stranded double-ion dependent DNA (diDNA) NMR structure of telomeric C.elegans fragment
Lenarcic Zivkovic, M., Trantirek, L.

Experiments performed 5 experiments Detail

Chemical shift validation 3 contents Detail