Search

Solution structure of the 8-17 DNAzyme in presence of Zn2+
Authors
Andralojc, W., Gdaniec, Z.
Assembly
Lanthanide-binding aptamer
Entity
1. Lanthanide-binding aptamer (polymer, Thiol state: not present), 35 monomers, 10904.89 Da Detail

CGCCGGGGTC GAAGACTGCC AGCGGCTCGA CGGCG


Formula weight
10904.89 Da
Source organism
synthetic construct
Exptl. method
solution NMR
Data set
assigned_chemical_shifts
Chemical Shifts 1
1H: 266, 31P: 32 assignments Detail
IDEntity IDSeq IDComp IDAtom IDAtom typeValVal errAmbig. code
111DCH1'H5.8170.011
211DCH2'H1.9910.011
311DCH2''H2.4540.011
411DCH3'H4.7360.011
511DCH4'H4.1050.011
611DCH5H5.9620.011
711DCH5'H3.7760.012
811DCH5''H3.7500.012
911DCH6H7.6840.011
1012DGH1'H5.9500.011
1112DGH2'H2.7340.011
1212DGH2''H2.7730.011
1312DGH3'H5.0190.011
1412DGH4'H4.4010.011
1512DGH5''H4.0380.012
1612DGH8H8.0240.011
1712DGPP-4.2010.051
1813DCH1'H6.0630.011
1913DCH2'H2.1500.011
2013DCH2''H2.4950.011
2113DCH3'H4.8920.011
2213DCH4'H4.2880.011
2313DCH5H5.4630.011
2413DCH5'H4.2410.012
2513DCH5''H4.1710.012
2613DCH6H7.4930.011
2713DCPP-4.3380.051
2814DCH1'H5.6260.011
2914DCH2'H1.7620.011
3014DCH2''H2.1840.011
3114DCH3'H4.8200.011
3214DCH4'H4.0910.011
3314DCH5H5.6240.011
3414DCH6H7.3540.011
3514DCPP-4.2610.051
3615DGH1'H5.9600.011
3715DGH2'H2.1800.011
3815DGH2''H2.4270.011
3915DGH3'H4.9730.011
4015DGH4'H4.3870.011
4115DGH8H7.4550.011
4215DGPP-4.2490.051
4316DGH1'H5.7310.011
4416DGH2'H3.1340.012
4516DGH2''H3.1480.012
4616DGH3'H5.2670.011
4716DGH4'H4.9620.011
4816DGH8H8.3030.011
4917DGH1'H6.3940.011
5017DGH2'H3.2510.012
5117DGH2''H3.0270.012
5217DGH3'H4.9220.011
5317DGH4'H4.5240.011
5417DGH5'H4.6590.012
5517DGH5''H4.3870.012
5617DGH8H8.4810.011
5717DGPP-3.9830.051
5818DGH1'H6.0250.011
5918DGH2'H2.5810.012
6018DGH2''H2.8350.012
6118DGH3'H4.9150.011
6218DGH4'H4.3650.011
6318DGH8H7.8010.011
6418DGPP-4.2820.051
6519DTH1'H6.0740.011
6619DTH2'H1.8760.012
6719DTH2''H2.4400.012
6819DTH3'H4.7920.011
6919DTH4'H4.2160.011
7019DTH6H7.4570.011
7119DTH71H1.4130.013
7219DTH72H1.4130.013
7319DTH73H1.4130.013
7419DTPP-4.4810.051
75110DCH1'H6.0360.011
76110DCH2'H1.7110.011
77110DCH2''H2.2590.011
78110DCH3'H4.8270.011
79110DCH4'H4.2450.011
80110DCH5H5.4800.011
81110DCH6H7.2320.011
82110DCPP-4.6430.051
83111DGH1'H5.3600.011
84111DGH2'H2.7020.011
85111DGH2''H2.5630.011
86111DGH3'H4.9200.011
87111DGH4'H4.4860.011
88111DGH8H8.1150.011
89111DGPP-4.9740.051
90112DAH1'H5.9910.011
91112DAH2'H2.2930.011
92112DAH2''H2.3450.011
93112DAH3'H4.5950.011
94112DAH4'H2.1470.011
95112DAH5'H3.3960.012
96112DAH5''H3.0870.012
97112DAH8H8.1500.011
98112DAPP-4.6590.051
99113DAH1'H6.2400.011
100113DAH2H8.0880.011
101113DAH2'H2.8630.012
102113DAH2''H2.8620.012
103113DAH3'H4.8600.011
104113DAH4'H4.3660.011
105113DAH8H7.9860.011
106113DAPP-4.7560.051
107114DGH1'H5.0770.011
108114DGH2'H2.6370.011
109114DGH2''H2.5790.011
110114DGH3'H4.9130.011
111114DGH4'H4.3670.011
112114DGH5'H4.2740.012
113114DGH5''H4.1360.012
114114DGH8H8.0600.011
115114DGPP-5.1890.051
116115DAH1'H6.2490.011
117115DAH2H8.0710.011
118115DAH2'H2.5880.011
119115DAH2''H2.7750.011
120115DAH3'H5.0340.011
121115DAH4'H4.4680.011
122115DAH5'H4.1950.012
123115DAH5''H4.1210.012
124115DAH8H8.1930.011
125115DAPP-3.6990.051
126116DCH1'H5.9500.011
127116DCH2'H1.9750.011
128116DCH2''H2.3340.011
129116DCH3'H4.8130.011
130116DCH4'H4.1980.011
131116DCH5H5.0220.011
132116DCH6H7.2310.011
133116DCPP-4.3930.051
134117DTH1'H5.4440.011
135117DTH2'H0.6150.011
136117DTH2''H1.5660.011
137117DTH3'H4.3990.011
138117DTH4'H4.1830.011
139117DTH5'H4.1360.012
140117DTH5''H3.7000.012
141117DTH6H6.9690.011
142117DTH71H1.3430.013
143117DTH72H1.3430.013
144117DTH73H1.3430.013
145117DTPP-5.1160.051
146118DGH1'H5.3800.011
147118DGH2'H2.8530.011
148118DGH2''H2.4940.011
149118DGH3'H4.9800.011
150118DGH4'H4.2590.011
151118DGH5''H3.8410.012
152118DGH8H7.9740.011
153118DGPP-4.5990.051
154119DCH1'H6.2510.011
155119DCH2'H2.0350.011
156119DCH2''H2.4050.011
157119DCH3'H4.9690.011
158119DCH4'H4.4430.011
159119DCH5H5.8770.011
160119DCH6H7.6000.011
161119DCPP-2.9620.051
162120DCH1'H6.4690.011
163120DCH2'H2.7740.012
164120DCH2''H2.7750.012
165120DCH3'H5.1730.011
166120DCH4'H4.8220.011
167120DCH5H5.8860.011
168120DCH5'H4.3620.012
169120DCH5''H4.0870.012
170120DCH6H7.8590.011
171120DCPP-4.9790.051
172121DAH1'H6.3330.011
173121DAH2H8.1950.011
174121DAH2'H2.1710.011
175121DAH2''H2.8250.011
176121DAH3'H5.2130.011
177121DAH4'H4.3510.011
178121DAH5'H4.4760.012
179121DAH5''H4.2190.012
180121DAH8H7.8760.011
181121DAPP-3.0940.051
182122DGH1'H5.9600.011
183122DGH2'H2.4960.012
184122DGH2''H2.5250.012
185122DGH3'H4.7070.011
186122DGH4'H4.3720.011
187122DGH8H8.0050.011
188122DGPP-4.1460.051
189123DCH1'H5.5070.011
190123DCH2'H1.8300.011
191123DCH2''H2.3040.011
192123DCH3'H4.4900.011
193123DCH4'H3.5320.011
194123DCH5H6.2440.011
195123DCH5'H3.7900.012
196123DCH5''H3.6680.012
197123DCH6H7.6830.011
198123DCPP-3.7300.051
199124DGH1'H5.7220.011
200124DGH2'H2.5770.011
201124DGH2''H2.8290.011
202124DGH3'H4.7310.011
203124DGH4'H4.2910.011
204124DGH5'H3.8500.012
205124DGH5''H3.5670.012
206124DGH8H7.7300.011
207124DGPP-4.1130.051
208125DGH1'H5.2180.011
209125DGH2'H2.4590.011
210125DGH2''H2.3280.011
211125DGH3'H4.7940.011
212125DGH4'H4.0310.011
213125DGH8H7.7360.011
214126DCH1'H6.0760.011
215126DCH2'H2.2100.012
216126DCH2''H2.4610.012
217126DCH3'H4.7200.011
218126DCH4'H3.6960.011
219126DCH5H5.6590.011
220126DCH5'H3.8090.012
221126DCH5''H3.7770.012
222126DCH6H7.4580.011
223126DCPP-3.4420.051
224127DTH1'H6.1310.011
225127DTH2'H1.6260.011
226127DTH2''H2.3060.011
227127DTH3'H4.6510.011
228127DTH4'H4.1970.011
229127DTH5'H4.0310.012
230127DTH6H7.2440.011
231127DTH71H1.6520.013
232127DTH72H1.6520.013
233127DTH73H1.6520.013
234127DTPP-4.9020.051
235128DCH1'H6.0080.011
236128DCH2'H2.1460.012
237128DCH2''H2.3930.012
238128DCH3'H4.8780.011
239128DCH4'H4.2780.011
240128DCH5H5.6170.011
241128DCH5'H3.9640.012
242128DCH6H7.3000.011
243128DCPP-4.7500.051
244129DGH3'H5.0130.011
245129DGH4'H4.5090.011
246129DGH8H8.1110.011
247129DGPP-5.1750.051
248130DAH1'H5.1490.011
249130DAH2H8.4760.011
250130DAH2'H1.4240.012
251130DAH2''H2.3270.012
252130DAH3'H4.6750.011
253130DAH4'H3.3350.011
254130DAH5'H3.9440.012
255130DAH5''H3.6770.012
256130DAH8H8.1220.011
257130DAPP-2.8170.051
258131DCH1'H5.0100.011
259131DCH2'H2.1140.011
260131DCH2''H2.3070.011
261131DCH3'H4.7990.011
262131DCH4'H3.9800.011
263131DCH5H5.7570.011
264131DCH5''H3.8370.012
265131DCH6H7.4020.011
266131DCPP-4.9430.051
267132DGH1'H5.7170.011
268132DGH2'H2.7320.011
269132DGH2''H2.8380.011
270132DGH3'H5.0460.011
271132DGH4'H4.4260.011
272132DGH5'H4.1330.012
273132DGH5''H4.0330.012
274132DGH8H7.9020.011
275132DGPP-3.7360.051
276133DGH1'H5.9060.011
277133DGH2'H2.5950.011
278133DGH2''H2.7390.011
279133DGH3'H5.0230.011
280133DGH4'H4.4310.011
281133DGH8H7.8090.011
282133DGPP-4.4020.051
283134DCH1'H5.7940.011
284134DCH2'H1.9230.011
285134DCH2''H2.3670.011
286134DCH3'H4.8340.011
287134DCH4'H4.1720.011
288134DCH5H5.4480.011
289134DCH6H7.3270.011
290134DCPP-4.2300.051
291135DGH1'H6.1880.011
292135DGH2'H2.6330.011
293135DGH2''H2.4050.011
294135DGH3'H4.6990.011
295135DGH4'H4.1950.011
296135DGH5'H4.1040.012
297135DGH8H7.9490.011
298135DGPP-4.0950.051

Chemical Shifts 2
1H: 36 assignments Detail
IDEntity IDSeq IDComp IDAtom IDAtom typeValVal errAmbig. code
29912DGH1H13.1070.011
30013DCH41H8.1900.011
30113DCH42H6.4580.011
30214DCH41H8.4500.011
30314DCH42H6.9220.011
30415DGH1H12.9170.011
30517DGH1H11.7080.011
30618DGH1H12.7980.011
30719DTH3H13.9130.011
308110DCH41H8.5000.011
309110DCH42H7.1460.011
310114DGH1H12.9670.011
311116DCH41H8.1000.011
312116DCH42H6.7250.011
313117DTH3H10.7440.011
314118DGH1H12.9110.011
315119DCH41H7.7360.011
316119DCH42H6.7160.011
317120DCH41H8.9180.011
318120DCH42H7.0750.011
319122DGH1H13.1620.011
320123DCH41H8.9860.011
321124DGH1H13.2160.011
322125DGH1H12.5320.011
323126DCH41H8.0550.011
324126DCH42H6.7990.011
325127DTH3H10.8080.011
326128DCH41H8.6870.011
327128DCH42H7.2710.011
328129DGH1H10.9720.011
329131DCH41H8.4880.011
330131DCH42H7.0410.011
331132DGH1H13.2360.011
332133DGH1H13.0510.011
333134DCH41H8.4590.011
334134DCH42H6.6510.011

Release date
2023-04-17
Citation
The 8-17 DNAzyme can operate in a single active structure regardless of metal ion cofactor
Wieruszewska, J., Pawlowicz, A., Polomska, E., Pasternak, K., Gdaniec, Z., Andralojc, W.
Nat. Commun. (2024), 15, 4218-4218, PubMed 38760331 , DOI 10.1038/s41467-024-48638-x ,
Experiments performed 5 experiments Detail
Chemical shift validation 4 contents Detail
Keywords 8-17, DNA, DNAzyme, zinc