Search

Structure of a chair-type antiparallel quadruplex-duplex hybrid at pH 6
Authors
Vianney, Y.M., Weisz, K.
Assembly
DNA (33-MER)
Entity
1. DNA (33-MER) (polymer, Thiol state: not present), 33 monomers, 10120.39 Da Detail

GGGCGCGAAG CATTCGCGGG GTTAGGGTTX GGG


Formula weight
10120.39 Da
Source organism
synthetic construct
Exptl. method
solution NMR
Data set
assigned_chemical_shifts
Chemcal Shifts
1H: 222, 13C: 38 assignments Detail
IDEntity IDSeq IDComp IDAtom IDAtom typeValVal errAmbig. code
111DGH1H11.7370.0021
211DGH1'H6.1370.0021
311DGH2'H2.6160.0031
411DGH2''H3.2240.0031
511DGH3'H5.0270.0031
611DGH8H7.4340.0021
711DGC8C141.4041
812DGH1H11.9720.0021
912DGH1'H5.9100.0041
1012DGH2'H2.5470.0091
1112DGH2''H2.8130.0021
1212DGH3'H5.1150.0031
1312DGH8H7.9260.0021
1412DGC8C138.1341
1513DGH1H11.3340.0041
1613DGH1'H5.9180.0031
1713DGH2'H2.7900.0041
1813DGH2''H2.5200.0031
1913DGH3'H5.0310.0031
2013DGH8H7.9890.0021
2113DGC8C138.7191
2214DCH1'H6.1890.0021
2314DCH2'H1.9860.0021
2414DCH2''H2.6160.0051
2514DCH3'H5.0300.0011
2614DCH5H5.7040.0031
2714DCH6H7.5610.0031
2814DCH41H8.0750.0011
2914DCH42H7.3440.0021
3014DCC6C143.0271
3115DGH1H12.6470.0021
3215DGH1'H5.5520.0021
3315DGH2'H2.6200.0031
3415DGH2''H2.5460.0031
3515DGH3'H4.9660.0041
3615DGH8H7.9190.0021
3715DGC8C138.1261
3816DCH1'H5.6800.0031
3916DCH2'H1.7900.0031
4016DCH2''H2.2570.0051
4116DCH3'H4.8120.0021
4216DCH5H5.4390.0021
4316DCH6H7.2850.0031
4416DCH41H8.1080.0041
4516DCH42H6.3240.0031
4616DCC6C142.6381
4717DGH1H12.7650.0041
4817DGH1'H5.2720.0021
4917DGH2'H2.6050.0051
5017DGH2''H2.6590.0021
5117DGH3'H4.9410.0041
5217DGH8H7.8520.0031
5317DGC8C138.1551
5418DAH1'H5.8640.0041
5518DAH2H7.5570.0021
5618DAH2'H2.2910.0021
5718DAH2''H2.5930.0031
5818DAH3'H4.9480.0041
5918DAH8H7.8990.0021
6018DAC2C154.4561
6118DAC8C141.0211
6219DAH1'H5.8560.0031
6319DAH2H7.6780.0031
6419DAH2'H2.0550.0041
6519DAH2''H2.4080.0031
6619DAH3'H4.8670.0021
6719DAH8H7.4590.0031
6819DAC2C154.9961
6919DAC8C139.9011
70110DGH1'H5.3690.0031
71110DGH2'H2.6270.0041
72110DGH2''H2.3390.0011
73110DGH3'H4.8050.0021
74110DGH8H8.0350.0011
75110DGC8C138.9901
76111DCH1'H5.6960.0021
77111DCH2'H1.5970.0051
78111DCH2''H2.0530.01
79111DCH3'H4.4180.0031
80111DCH5H5.2270.0021
81111DCH6H7.2050.0031
82111DCC6C143.6311
83112DAH1'H6.3050.0031
84112DAH2H8.0270.0021
85112DAH2'H2.9740.0151
86112DAH2''H2.9340.01
87112DAH3'H4.8120.0031
88112DAH8H8.0820.0021
89112DAC2C155.3851
90112DAC8C143.1051
91113DTH1'H5.6770.0051
92113DTH2'H2.1120.0071
93113DTH2''H2.4830.0011
94113DTH3H13.2730.0041
95113DTH3'H4.7540.0051
96113DTH6H7.4000.0011
97113DTH71H1.8310.0031
98113DTH72H1.8310.0031
99113DTH73H1.8310.0031
100113DTC6C139.3681
101114DTH1'H6.0160.0041
102114DTH2'H2.1410.0071
103114DTH2''H2.4050.0031
104114DTH3H13.8620.0011
105114DTH3'H4.8380.0031
106114DTH6H7.3990.0031
107114DTH71H1.6210.0051
108114DTH72H1.6210.0051
109114DTH73H1.6210.0051
110114DTC6C139.8371
111115DCH1'H5.4500.0021
112115DCH2'H1.9890.0041
113115DCH2''H2.2200.0021
114115DCH3'H4.7490.0021
115115DCH5H5.6370.0021
116115DCH6H7.4450.0051
117115DCH41H8.4620.0011
118115DCH42H6.8660.0021
119115DCC6C143.6801
120116DGH1H12.7700.0041
121116DGH1'H5.6770.0031
122116DGH2'H2.1960.0051
123116DGH2''H2.2370.0051
124116DGH3'H4.7140.0021
125116DGH8H7.5790.0021
126116DGC8C138.1271
127117DCH1'H5.3700.0041
128117DCH2'H1.6880.0021
129117DCH2''H2.0520.0051
130117DCH3'H4.5810.0041
131117DCH5H4.4240.0021
132117DCH6H7.0320.0031
133117DCH41H7.8630.0011
134117DCH42H6.6070.0021
135117DCC6C142.7931
136118DGH1H13.5700.0041
137118DGH1'H6.0230.0061
138118DGH2'H2.5650.0041
139118DGH2''H3.1920.0041
140118DGH3'H4.9690.0041
141118DGH8H8.4140.0031
142118DGC8C139.8601
143119DGH1H11.1930.0031
144119DGH1'H5.7990.0021
145119DGH2'H2.9810.0021
146119DGH2''H2.7850.01
147119DGH3'H4.9340.0031
148119DGH8H7.1990.0031
149119DGC8C141.4101
150120DGH1H10.9000.0041
151120DGH1'H5.6490.0031
152120DGH2'H2.3480.0061
153120DGH2''H2.2470.0031
154120DGH3'H4.9430.0051
155120DGH8H7.2080.0041
156120DGC8C140.6621
157121DGH1H11.1960.0051
158121DGH1'H5.8980.0031
159121DGH2'H2.6570.0031
160121DGH2''H2.4910.0041
161121DGH3'H5.0970.0011
162121DGH8H7.8440.0041
163121DGC8C138.1511
164122DTH1'H6.2590.0031
165122DTH2'H2.2760.0021
166122DTH2''H2.4660.0051
167122DTH3'H4.8440.0021
168122DTH6H7.8260.0051
169122DTH71H1.9610.0021
170122DTH72H1.9610.0021
171122DTH73H1.9610.0021
172122DTC6C140.0301
173123DTH1'H5.7430.0041
174123DTH2'H1.1850.0031
175123DTH2''H1.7790.0011
176123DTH3'H4.5910.0021
177123DTH6H7.1820.0021
178123DTH71H1.5520.0051
179123DTH72H1.5520.0051
180123DTH73H1.5520.0051
181123DTC6C138.6451
182124DAH1'H5.7890.0031
183124DAH2H7.5240.0021
184124DAH2'H2.6910.0081
185124DAH2''H2.7030.0041
186124DAH3'H4.9240.0011
187124DAH8H7.8560.0021
188124DAC2C155.2561
189124DAC8C141.2151
190125DGH1H11.0400.0031
191125DGH1'H6.0230.0031
192125DGH2'H3.3180.0041
193125DGH2''H2.9200.0011
194125DGH3'H4.8890.0021
195125DGH8H7.3480.0021
196125DGC8C142.1101
197126DGH1H12.0270.0041
198126DGH1'H5.8320.0031
199126DGH2'H2.4880.0041
200126DGH2''H2.7510.0041
201126DGH3'H5.0450.0021
202126DGH8H7.8260.0021
203126DGC8C138.3251
204127DGH1H10.9720.0031
205127DGH1'H6.0380.0031
206127DGH2'H2.7230.0031
207127DGH2''H2.4690.0041
208127DGH3'H4.9450.0061
209127DGH8H7.8490.0031
210127DGC8C138.1091
211128DTH1'H6.4530.0041
212128DTH2'H2.3290.0031
213128DTH2''H2.5920.0021
214128DTH3'H4.9620.0051
215128DTH6H7.6920.0031
216128DTH71H1.7510.0021
217128DTH72H1.7510.0021
218128DTH73H1.7510.0021
219128DTC6C140.4751
220129DTH1'H6.4890.0031
221129DTH2'H2.2580.0011
222129DTH2''H2.4160.0041
223129DTH3'H4.8110.0041
224129DTH6H7.8410.0031
225129DTH71H2.0790.0011
226129DTH72H2.0790.0011
227129DTH73H2.0790.0011
228129DTC6C139.6001
229130A1H3GH1H14.3400.0031
230130A1H3GH1'H5.3590.0021
231130A1H3GH2H7.1800.0031
232130A1H3GH2'H2.0310.0031
233130A1H3GH2''H2.4230.0031
234130A1H3GH3'H4.7830.0011
235130A1H3GH8H7.9890.0021
236130A1H3GH61H8.7280.0041
237130A1H3GH62H11.4660.0031
238130A1H3GC2C145.9811
239130A1H3GC8C143.4841
240131DGH1H10.9480.0041
241131DGH1'H6.2150.0021
242131DGH2'H3.6800.0031
243131DGH2''H3.1880.0031
244131DGH3'H4.9720.01
245131DGH8H7.1520.0021
246131DGC8C141.6641
247132DGH1H11.1760.0041
248132DGH1'H5.9940.0031
249132DGH2'H2.7320.0031
250132DGH2''H2.5420.0021
251132DGH3'H5.1110.0051
252132DGH8H7.4070.0041
253132DGC8C140.7381
254133DGH1H11.7400.0041
255133DGH1'H6.1780.0051
256133DGH2'H2.6170.0061
257133DGH2''H2.2900.0021
258133DGH3'H4.7081
259133DGH8H8.0880.0011
260133DGC8C139.0661

Release date
2024-02-18
Citation
A pH-Responsive Topological Switch Based on a DNA Quadruplex-Duplex Hybrid
Vianney, Y.M., Jana, J., Weisz, K.
Chemistry (2024), e202400722-e202400722, PubMed 38497675 , DOI 10.1002/chem.202400722 ,
Experiments performed 4 experiments Detail
Chemical shift validation 3 contents Detail
Keywords DNA, G-quadruplex, Quadruplex-duplex hybrid, acidic pH, antiparallel