BMRB: 36125

Antimicrobial peptide AY1C designed from the skin secretion of Chinese Odorous frogs

Authors

Pal, I., Atreya, H.S., Bhunia, A.

Assembly

designed AY1C

Entity

1. designed AY1C (polymer, Thiol state: all free), 19 monomers, 2259.820 Da Detail

FLPKLFAKIT KKNMAHIRC

Formula weight

2259.82 Da

Source organism

Odorrana andersonii

Exptl. method

solution NMR

Refine. method

distance geometry

Data set

assigned_chemical_shifts, spectral_peak_list

Chemcal Shifts

¹H: 103 assignments Detail

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ID	Entity ID	Seq ID	Comp ID	Atom ID	Atom type	Val	Val err	Ambig. code
1	1	2	LEU	H	H	8.360	0.000
2	1	2	LEU	HA	H	4.691	0.000
3	1	2	LEU	HB2	H	1.403	0.000
4	1	2	LEU	HB3	H	1.324	0.000
5	1	2	LEU	HD11	H	0.697	0.000
6	1	2	LEU	HD12	H	0.697	0.000
7	1	2	LEU	HD13	H	0.697	0.000
8	1	4	LYS	H	H	8.189	0.009
9	1	4	LYS	HA	H	3.975	0.000
10	1	4	LYS	HB2	H	1.494	0.000
11	1	5	LEU	H	H	7.998	0.000
12	1	5	LEU	HA	H	4.094	0.000
13	1	5	LEU	HB2	H	1.339	0.000
14	1	5	LEU	HB3	H	1.230	0.000
15	1	5	LEU	HG	H	1.131	0.000
16	1	5	LEU	HD11	H	0.690	0.000
17	1	5	LEU	HD12	H	0.690	0.000
18	1	5	LEU	HD13	H	0.690	0.000
19	1	5	LEU	HD21	H	0.610	0.000
20	1	5	LEU	HD22	H	0.610	0.000
21	1	5	LEU	HD23	H	0.610	0.000
22	1	6	PHE	H	H	8.077	0.000
23	1	6	PHE	HA	H	4.373	0.000
24	1	6	PHE	HB2	H	2.945	0.000
25	1	6	PHE	HB3	H	2.800	0.000
26	1	7	ALA	H	H	7.983	0.000
27	1	7	ALA	HA	H	4.071	0.000
28	1	7	ALA	HB1	H	1.137	0.000
29	1	7	ALA	HB2	H	1.137	0.000
30	1	7	ALA	HB3	H	1.137	0.000
31	1	8	LYS	H	H	8.092	0.000
32	1	8	LYS	HA	H	4.062	0.000
33	1	8	LYS	HB2	H	1.576	0.000
34	1	8	LYS	HB3	H	1.504	0.000
35	1	8	LYS	HG2	H	1.266	0.000
36	1	8	LYS	HG3	H	1.200	0.000
37	1	8	LYS	HD2	H	1.364	0.000
38	1	9	ILE	H	H	8.119	0.000
39	1	9	ILE	HA	H	4.035	0.000
40	1	9	ILE	HB	H	1.663	0.000
41	1	9	ILE	HG12	H	1.274	0.000
42	1	9	ILE	HG13	H	0.993	0.000
43	1	9	ILE	HG21	H	0.697	0.000
44	1	9	ILE	HG22	H	0.697	0.000
45	1	9	ILE	HG23	H	0.697	0.000
46	1	9	ILE	HD11	H	0.625	0.000
47	1	9	ILE	HD12	H	0.625	0.000
48	1	9	ILE	HD13	H	0.625	0.000
49	1	10	THR	H	H	8.205	0.000
50	1	10	THR	HA	H	4.691	0.000
51	1	10	THR	HB	H	4.153	0.000
52	1	10	THR	HG21	H	0.984	0.000
53	1	10	THR	HG22	H	0.984	0.000
54	1	10	THR	HG23	H	0.984	0.000
55	1	11	LYS	H	H	8.248	0.000
56	1	11	LYS	HA	H	4.100	0.000
57	1	11	LYS	HB2	H	1.624	0.000
58	1	11	LYS	HG2	H	1.201	0.000
59	1	11	LYS	HD2	H	1.467	0.000
60	1	11	LYS	HE2	H	2.788	0.000
61	1	12	LYS	H	H	8.232	0.000
62	1	12	LYS	HA	H	3.999	0.000
63	1	12	LYS	HB2	H	1.598	0.000
64	1	12	LYS	HG2	H	1.224	0.000
65	1	12	LYS	HD2	H	1.498	0.000
66	1	12	LYS	HE2	H	2.773	0.000
67	1	13	ASN	H	H	8.350	0.000
68	1	13	ASN	HA	H	4.460	0.000
69	1	13	ASN	HB2	H	2.636	0.000
70	1	13	ASN	HB3	H	2.557	0.000
71	1	14	MET	H	H	8.197	0.000
72	1	14	MET	HA	H	4.249	0.000
73	1	14	MET	HB2	H	1.917	0.000
74	1	14	MET	HB3	H	1.758	0.000
75	1	14	MET	HG2	H	2.400	0.000
76	1	14	MET	HG3	H	2.303	0.000
77	1	15	ALA	H	H	8.057	0.000
78	1	15	ALA	HA	H	4.035	0.000
79	1	15	ALA	HB1	H	1.122	0.000
80	1	15	ALA	HB2	H	1.122	0.000
81	1	15	ALA	HB3	H	1.122	0.000
82	1	16	HIS	H	H	8.263	0.000
83	1	16	HIS	HA	H	4.477	0.000
84	1	16	HIS	HB2	H	3.028	0.000
85	1	16	HIS	HB3	H	2.931	0.000
86	1	17	ILE	H	H	7.994	0.000
87	1	17	ILE	HA	H	3.963	0.000
88	1	17	ILE	HB	H	1.649	0.000
89	1	17	ILE	HG12	H	1.133	0.000
90	1	17	ILE	HG21	H	0.689	0.000
91	1	17	ILE	HG22	H	0.689	0.000
92	1	17	ILE	HG23	H	0.689	0.000
93	1	17	ILE	HD11	H	0.610	0.000
94	1	17	ILE	HD12	H	0.610	0.000
95	1	17	ILE	HD13	H	0.610	0.000
96	1	18	ARG	H	H	8.286	0.000
97	1	18	ARG	HA	H	4.221	0.000
98	1	18	ARG	HB2	H	1.696	0.000
99	1	18	ARG	HB3	H	1.579	0.000
100	1	18	ARG	HG2	H	1.434	0.000
101	1	18	ARG	HD2	H	3.007	0.000
102	1	19	CYS	HB2	H	3.035	0.000
103	1	19	CYS	HB3	H	2.786	0.000

Protein Blocks Logo

Calculated from 20 models in PDB: 5YKL, Strand ID: A Detail

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Release date

2017-10-19

Citation

Rapid identification of precursor cDNAs encoding five structural classes of antimicrobial peptides from pickerel frog (Rana palustris) skin secretion by single step "shotgun" cloning
Pal, I., Bhattacharyya, D., Kar, R.K., Zarena, D., Bhunia, A., Atreya, H.S.
Peptides (2007), 28, 1605-1610, PubMed 17698247 , DOI 10.1016/j.peptides.2007.07.019 , Abstract

Entries sharing articles Swiss-Prot: 6 entries Detail

Related entities 1. designed AY1C, : 1 : 2 entities Detail

Experiments performed 2 experiments Detail