BMRBj - BMREntryMaster

ID	Entity ID	Seq ID	Comp ID	Atom ID	Atom type	Val	Val err	Ambig. code
1	1	1	THR	HA	H	4.694	0.02	1
2	1	1	THR	HB	H	4.344	0.02	1
3	1	1	THR	HG21	H	1.300	0.02	1
4	1	1	THR	HG22	H	1.300	0.02	1
5	1	1	THR	HG23	H	1.300	0.02	1
6	1	1	THR	CA	C	61.400	0.2	1
7	1	1	THR	CB	C	69.122	0.2	1
8	1	1	THR	CG2	C	21.200	0.2	1
9	1	1	THR	N	N	116.048	0.1	1
10	1	2	ARG	H	H	8.492	0.02	1
11	1	2	ARG	HA	H	4.470	0.02	1
12	1	2	ARG	HB2	H	1.990	0.02	2
13	1	2	ARG	HB3	H	1.890	0.02	2
14	1	2	ARG	HG2	H	1.740	0.02	2
15	1	2	ARG	HG3	H	1.740	0.02	2
16	1	2	ARG	HD2	H	3.305	0.02	2
17	1	2	ARG	HD3	H	3.305	0.02	2
18	1	2	ARG	CA	C	55.800	0.2	1
19	1	2	ARG	CB	C	30.300	0.2	1
20	1	2	ARG	CG	C	26.619	0.2	1
21	1	2	ARG	CD	C	42.843	0.2	1
22	1	2	ARG	N	N	123.135	0.1	1
23	1	3	GLY	H	H	8.536	0.02	1
24	1	3	GLY	HA2	H	4.120	0.02	2
25	1	3	GLY	HA3	H	4.694	0.02	2
26	1	3	GLY	CA	C	44.738	0.2	1
27	1	3	GLY	N	N	109.880	0.1	1
28	1	4	THR	H	H	8.161	0.02	1
29	1	4	THR	HB	H	4.370	0.02	1
30	1	4	THR	HG21	H	1.310	0.02	1
31	1	4	THR	HG22	H	1.310	0.02	1
32	1	4	THR	HG23	H	1.310	0.02	1
33	1	4	THR	CA	C	61.500	0.2	1
34	1	4	THR	CB	C	69.200	0.2	1
35	1	4	THR	CG2	C	21.267	0.2	1
36	1	4	THR	N	N	113.284	0.1	1
37	1	5	THR	H	H	8.282	0.02	1
38	1	5	THR	HA	H	4.430	0.02	1
39	1	5	THR	HB	H	4.400	0.02	1
40	1	5	THR	HG21	H	1.300	0.02	1
41	1	5	THR	HG22	H	1.300	0.02	1
42	1	5	THR	HG23	H	1.300	0.02	1
43	1	5	THR	CA	C	61.646	0.2	1
44	1	5	THR	CB	C	68.875	0.2	1
45	1	5	THR	CG2	C	21.300	0.2	1
46	1	5	THR	N	N	114.877	0.1	1
47	1	6	ASP	H	H	8.323	0.02	1
48	1	6	ASP	HA	H	4.648	0.02	1
49	1	6	ASP	HB2	H	2.728	0.02	2
50	1	6	ASP	HB3	H	2.740	0.02	2
51	1	6	ASP	CA	C	54.296	0.2	1
52	1	6	ASP	CB	C	40.700	0.2	1
53	1	6	ASP	N	N	122.050	0.1	1
54	1	7	ASN	H	H	8.306	0.02	1
55	1	7	ASN	HA	H	4.797	0.02	1
56	1	7	ASN	HB2	H	2.870	0.02	2
57	1	7	ASN	HB3	H	2.945	0.02	2
58	1	7	ASN	HD21	H	7.715	0.02	2
59	1	7	ASN	HD22	H	6.977	0.02	2
60	1	7	ASN	CA	C	52.764	0.2	1
61	1	7	ASN	CB	C	38.475	0.2	1
62	1	7	ASN	N	N	117.954	0.1	1
63	1	7	ASN	ND2	N	112.212	0.1	1
64	1	8	LEU	H	H	8.493	0.02	1
65	1	8	LEU	HA	H	4.305	0.02	1
66	1	8	LEU	HB2	H	1.460	0.02	2
67	1	8	LEU	HB3	H	1.740	0.02	2
68	1	8	LEU	HG	H	1.700	0.02	1
69	1	8	LEU	HD11	H	0.916	0.02	2
70	1	8	LEU	HD12	H	0.916	0.02	2
71	1	8	LEU	HD13	H	0.916	0.02	2
72	1	8	LEU	HD21	H	1.027	0.02	2
73	1	8	LEU	HD22	H	1.027	0.02	2
74	1	8	LEU	HD23	H	1.027	0.02	2
75	1	8	LEU	CA	C	55.524	0.2	1
76	1	8	LEU	CB	C	42.200	0.2	1
77	1	8	LEU	CG	C	26.600	0.2	1
78	1	8	LEU	CD1	C	23.100	0.2	1
79	1	8	LEU	CD2	C	24.800	0.2	1
80	1	8	LEU	N	N	121.407	0.1	1
81	1	9	ILE	H	H	8.242	0.02	1
82	1	9	ILE	HA	H	4.160	0.02	1
83	1	9	ILE	HB	H	2.220	0.02	1
84	1	9	ILE	HG12	H	1.300	0.02	1
85	1	9	ILE	HG13	H	1.781	0.02	1
86	1	9	ILE	HG21	H	1.030	0.02	1
87	1	9	ILE	HG22	H	1.030	0.02	1
88	1	9	ILE	HG23	H	1.030	0.02	1
89	1	9	ILE	HD11	H	1.021	0.02	1
90	1	9	ILE	HD12	H	1.021	0.02	1
91	1	9	ILE	HD13	H	1.021	0.02	1
92	1	9	ILE	CA	C	62.500	0.2	1
93	1	9	ILE	CB	C	35.500	0.2	1
94	1	9	ILE	CG2	C	17.200	0.2	1
95	1	9	ILE	CD1	C	12.280	0.2	1
96	1	9	ILE	N	N	119.330	0.1	1
97	1	10	PRO	HA	H	4.350	0.02	1
98	1	10	PRO	HB2	H	1.850	0.02	2
99	1	10	PRO	HB3	H	2.500	0.02	2
100	1	10	PRO	HG2	H	2.180	0.02	2
101	1	10	PRO	HG3	H	2.110	0.02	2
102	1	10	PRO	HD2	H	3.840	0.02	2
103	1	10	PRO	HD3	H	3.660	0.02	2
104	1	10	PRO	CA	C	64.800	0.2	1
105	1	10	PRO	CB	C	31.400	0.2	1
106	1	10	PRO	CG	C	27.700	0.2	1
107	1	10	PRO	CD	C	49.600	0.2	1
108	1	11	VAL	HA	H	3.820	0.02	1
109	1	11	VAL	HB	H	2.243	0.02	1
110	1	11	VAL	HG11	H	1.121	0.02	2
111	1	11	VAL	HG12	H	1.121	0.02	2
112	1	11	VAL	HG13	H	1.121	0.02	2
113	1	11	VAL	HG21	H	0.930	0.02	2
114	1	11	VAL	HG22	H	0.930	0.02	2
115	1	11	VAL	HG23	H	0.930	0.02	2
116	1	11	VAL	CA	C	65.700	0.2	1
117	1	11	VAL	CB	C	30.900	0.2	1
118	1	11	VAL	CG1	C	22.089	0.2	1
119	1	11	VAL	CG2	C	20.420	0.2	1
120	1	12	TYR	H	H	8.340	0.02	1
121	1	12	TYR	HA	H	4.400	0.02	1
122	1	12	TYR	HB2	H	3.170	0.02	2
123	1	12	TYR	HB3	H	3.140	0.02	2
124	1	12	TYR	HD1	H	7.040	0.02	3
125	1	12	TYR	HE1	H	6.836	0.02	3
126	1	12	TYR	CA	C	56.900	0.2	1
127	1	12	TYR	CB	C	36.800	0.2	1
128	1	12	TYR	CD1	C	131.130	0.2	3
129	1	12	TYR	CE1	C	117.690	0.2	3
130	1	12	TYR	N	N	117.800	0.1	1
131	1	13	CYS	HA	H	4.340	0.02	1
132	1	13	CYS	HB2	H	3.270	0.02	2
133	1	13	CYS	HB3	H	3.310	0.02	2
134	1	13	CYS	CA	C	58.750	0.2	1
135	1	13	CYS	CB	C	41.200	0.2	1
136	1	14	SER	H	H	7.901	0.02	1
137	1	14	SER	HA	H	4.180	0.02	1
138	1	14	SER	HB2	H	3.850	0.02	2
139	1	14	SER	HB3	H	3.890	0.02	2
140	1	14	SER	CA	C	62.300	0.2	1
141	1	14	SER	CB	C	62.500	0.2	1
142	1	14	SER	N	N	116.740	0.1	1
143	1	15	ILE	H	H	7.913	0.02	1
144	1	15	ILE	HA	H	3.734	0.02	1
145	1	15	ILE	HB	H	2.090	0.02	1
146	1	15	ILE	HG12	H	1.105	0.02	1
147	1	15	ILE	HG13	H	2.000	0.02	1
148	1	15	ILE	HG21	H	0.969	0.02	1
149	1	15	ILE	HG22	H	0.969	0.02	1
150	1	15	ILE	HG23	H	0.969	0.02	1
151	1	15	ILE	HD11	H	0.936	0.02	1
152	1	15	ILE	HD12	H	0.936	0.02	1
153	1	15	ILE	HD13	H	0.936	0.02	1
154	1	15	ILE	CA	C	64.750	0.2	1
155	1	15	ILE	CB	C	37.100	0.2	1
156	1	15	ILE	CG1	C	28.700	0.2	1
157	1	15	ILE	CG2	C	16.800	0.2	1
158	1	15	ILE	CD1	C	13.150	0.2	1
159	1	15	ILE	N	N	120.881	0.1	1
160	1	16	LEU	H	H	8.023	0.02	1
161	1	16	LEU	HA	H	4.040	0.02	1
162	1	16	LEU	HB2	H	1.750	0.02	2
163	1	16	LEU	HB3	H	1.990	0.02	2
164	1	16	LEU	HG	H	1.940	0.02	1
165	1	16	LEU	HD11	H	0.974	0.02	2
166	1	16	LEU	HD12	H	0.974	0.02	2
167	1	16	LEU	HD13	H	0.974	0.02	2
168	1	16	LEU	HD21	H	1.001	0.02	2
169	1	16	LEU	HD22	H	1.001	0.02	2
170	1	16	LEU	HD23	H	1.001	0.02	2
171	1	16	LEU	CA	C	57.700	0.2	1
172	1	16	LEU	CB	C	41.400	0.2	1
173	1	16	LEU	CG	C	26.400	0.2	1
174	1	16	LEU	CD1	C	23.800	0.2	1
175	1	16	LEU	CD2	C	24.200	0.2	1
176	1	16	LEU	N	N	118.235	0.1	1
177	1	17	ALA	H	H	8.230	0.02	1
178	1	17	ALA	HA	H	3.970	0.02	1
179	1	17	ALA	HB1	H	1.550	0.02	1
180	1	17	ALA	HB2	H	1.550	0.02	1
181	1	17	ALA	HB3	H	1.550	0.02	1
182	1	17	ALA	CA	C	55.000	0.2	1
183	1	17	ALA	CB	C	17.500	0.2	1
184	1	17	ALA	N	N	118.959	0.1	1
185	1	18	ALA	H	H	7.990	0.02	1
186	1	18	ALA	HA	H	3.966	0.02	1
187	1	18	ALA	HB1	H	1.560	0.02	1
188	1	18	ALA	HB2	H	1.560	0.02	1
189	1	18	ALA	HB3	H	1.560	0.02	1
190	1	18	ALA	CA	C	54.900	0.2	1
191	1	18	ALA	CB	C	17.500	0.2	1
192	1	18	ALA	N	N	118.787	0.1	1
193	1	19	VAL	H	H	8.255	0.02	1
194	1	19	VAL	HA	H	3.620	0.02	1
195	1	19	VAL	HB	H	2.390	0.02	1
196	1	19	VAL	HG11	H	0.945	0.02	2
197	1	19	VAL	HG12	H	0.945	0.02	2
198	1	19	VAL	HG13	H	0.945	0.02	2
199	1	19	VAL	HG21	H	1.104	0.02	2
200	1	19	VAL	HG22	H	1.104	0.02	2
201	1	19	VAL	HG23	H	1.104	0.02	2
202	1	19	VAL	CA	C	66.167	0.2	1
203	1	19	VAL	CB	C	30.700	0.2	1
204	1	19	VAL	CG1	C	20.700	0.2	1
205	1	19	VAL	CG2	C	22.400	0.2	1
206	1	19	VAL	N	N	116.238	0.1	1
207	1	20	VAL	H	H	8.209	0.02	1
208	1	20	VAL	HA	H	3.604	0.02	1
209	1	20	VAL	HB	H	2.270	0.02	1
210	1	20	VAL	HG11	H	0.940	0.02	2
211	1	20	VAL	HG12	H	0.940	0.02	2
212	1	20	VAL	HG13	H	0.940	0.02	2
213	1	20	VAL	HG21	H	1.100	0.02	2
214	1	20	VAL	HG22	H	1.100	0.02	2
215	1	20	VAL	HG23	H	1.100	0.02	2
216	1	20	VAL	CA	C	67.300	0.2	1
217	1	20	VAL	CB	C	30.600	0.2	1
218	1	20	VAL	CG1	C	20.800	0.2	1
219	1	20	VAL	CG2	C	23.300	0.2	1
220	1	20	VAL	N	N	118.426	0.1	1
221	1	21	VAL	H	H	8.465	0.02	1
222	1	21	VAL	HA	H	3.540	0.02	1
223	1	21	VAL	HB	H	2.240	0.02	1
224	1	21	VAL	HG11	H	0.950	0.02	2
225	1	21	VAL	HG12	H	0.950	0.02	2
226	1	21	VAL	HG13	H	0.950	0.02	2
227	1	21	VAL	HG21	H	1.100	0.02	2
228	1	21	VAL	HG22	H	1.100	0.02	2
229	1	21	VAL	HG23	H	1.100	0.02	2
230	1	21	VAL	CA	C	66.900	0.2	1
231	1	21	VAL	CB	C	30.400	0.2	1
232	1	21	VAL	CG1	C	20.800	0.2	1
233	1	21	VAL	CG2	C	22.870	0.2	1
234	1	21	VAL	N	N	118.290	0.1	1
235	1	22	GLY	H	H	8.641	0.02	1
236	1	22	GLY	HA2	H	3.637	0.02	2
237	1	22	GLY	HA3	H	3.750	0.02	2
238	1	22	GLY	CA	C	47.000	0.2	1
239	1	22	GLY	N	N	106.514	0.1	1
240	1	23	LEU	H	H	8.613	0.02	1
241	1	23	LEU	HA	H	4.259	0.02	1
242	1	23	LEU	HB2	H	1.780	0.02	2
243	1	23	LEU	HB3	H	2.010	0.02	2
244	1	23	LEU	HG	H	1.960	0.02	1
245	1	23	LEU	HD11	H	1.000	0.02	2
246	1	23	LEU	HD12	H	1.000	0.02	2
247	1	23	LEU	HD13	H	1.000	0.02	2
248	1	23	LEU	HD21	H	0.940	0.02	2
249	1	23	LEU	HD22	H	0.940	0.02	2
250	1	23	LEU	HD23	H	0.940	0.02	2
251	1	23	LEU	CA	C	57.860	0.2	1
252	1	23	LEU	CB	C	41.731	0.2	1
253	1	23	LEU	CG	C	26.400	0.2	1
254	1	23	LEU	CD1	C	24.600	0.2	1
255	1	23	LEU	CD2	C	23.900	0.2	1
256	1	23	LEU	N	N	121.310	0.1	1
257	1	24	VAL	H	H	8.519	0.02	1
258	1	24	VAL	HA	H	3.620	0.02	1
259	1	24	VAL	HB	H	2.330	0.02	1
260	1	24	VAL	HG11	H	0.990	0.02	2
261	1	24	VAL	HG12	H	0.990	0.02	2
262	1	24	VAL	HG13	H	0.990	0.02	2
263	1	24	VAL	HG21	H	1.140	0.02	2
264	1	24	VAL	HG22	H	1.140	0.02	2
265	1	24	VAL	HG23	H	1.140	0.02	2
266	1	24	VAL	CA	C	66.780	0.2	1
267	1	24	VAL	CB	C	30.500	0.2	1
268	1	24	VAL	CG1	C	21.100	0.2	1
269	1	24	VAL	CG2	C	22.800	0.2	1
270	1	24	VAL	N	N	118.332	0.1	1
271	1	25	ALA	H	H	8.820	0.02	1
272	1	25	ALA	HA	H	4.050	0.02	1
273	1	25	ALA	HB1	H	1.600	0.02	1
274	1	25	ALA	HB2	H	1.600	0.02	1
275	1	25	ALA	HB3	H	1.600	0.02	1
276	1	25	ALA	CA	C	55.000	0.2	1
277	1	25	ALA	CB	C	17.700	0.2	1
278	1	25	ALA	N	N	121.034	0.1	1
279	1	26	TYR	H	H	8.649	0.02	1
280	1	26	TYR	HA	H	4.250	0.02	1
281	1	26	TYR	HB2	H	3.260	0.02	2
282	1	26	TYR	HB3	H	3.400	0.02	2
283	1	26	TYR	HD1	H	7.031	0.02	3
284	1	26	TYR	HE1	H	6.857	0.02	3
285	1	26	TYR	CA	C	61.760	0.2	1
286	1	26	TYR	CB	C	38.300	0.2	1
287	1	26	TYR	CD1	C	131.963	0.2	3
288	1	26	TYR	CE1	C	117.242	0.2	3
289	1	26	TYR	N	N	118.002	0.1	1
290	1	27	ILE	H	H	8.536	0.02	1
291	1	27	ILE	HA	H	3.550	0.02	1
292	1	27	ILE	HB	H	2.130	0.02	1
293	1	27	ILE	HG12	H	1.370	0.02	1
294	1	27	ILE	HG13	H	2.120	0.02	1
295	1	27	ILE	HG21	H	0.990	0.02	1
296	1	27	ILE	HG22	H	0.990	0.02	1
297	1	27	ILE	HG23	H	0.990	0.02	1
298	1	27	ILE	HD11	H	1.000	0.02	1
299	1	27	ILE	HD12	H	1.000	0.02	1
300	1	27	ILE	HD13	H	1.000	0.02	1
301	1	27	ILE	CA	C	64.650	0.2	1
302	1	27	ILE	CB	C	37.000	0.2	1
303	1	27	ILE	CG1	C	28.800	0.2	1
304	1	27	ILE	CG2	C	17.100	0.2	1
305	1	27	ILE	CD1	C	12.900	0.2	1
306	1	27	ILE	N	N	118.300	0.1	1
307	1	28	ALA	H	H	8.854	0.02	1
308	1	28	ALA	HA	H	3.962	0.02	1
309	1	28	ALA	HB1	H	1.450	0.02	1
310	1	28	ALA	HB2	H	1.450	0.02	1
311	1	28	ALA	HB3	H	1.450	0.02	1
312	1	28	ALA	CA	C	54.970	0.2	1
313	1	28	ALA	CB	C	17.600	0.2	1
314	1	28	ALA	N	N	121.578	0.1	1
315	1	29	PHE	H	H	8.762	0.02	1
316	1	29	PHE	HA	H	4.280	0.02	1
317	1	29	PHE	HB2	H	3.289	0.02	2
318	1	29	PHE	HB3	H	3.356	0.02	2
319	1	29	PHE	HD1	H	7.274	0.02	3
320	1	29	PHE	HE1	H	7.419	0.02	3
321	1	29	PHE	HZ	H	7.377	0.02	1
322	1	29	PHE	CA	C	60.850	0.2	1
323	1	29	PHE	CB	C	38.800	0.2	1
324	1	29	PHE	CD1	C	131.203	0.2	3
325	1	29	PHE	CE1	C	130.601	0.2	3
326	1	29	PHE	CZ	C	129.131	0.2	1
327	1	29	PHE	N	N	117.002	0.1	1
328	1	30	LYS	H	H	8.327	0.02	1
329	1	30	LYS	HA	H	3.995	0.02	1
330	1	30	LYS	HB2	H	1.730	0.02	2
331	1	30	LYS	HB3	H	1.850	0.02	2
332	1	30	LYS	HG2	H	1.200	0.02	2
333	1	30	LYS	HG3	H	1.340	0.02	2
334	1	30	LYS	HD2	H	1.650	0.02	2
335	1	30	LYS	HD3	H	1.630	0.02	2
336	1	30	LYS	HE2	H	2.930	0.02	2
337	1	30	LYS	HE3	H	3.050	0.02	2
338	1	30	LYS	CA	C	56.950	0.2	1
339	1	30	LYS	CB	C	30.822	0.2	1
340	1	30	LYS	CG	C	23.600	0.2	1
341	1	30	LYS	CD	C	27.400	0.2	1
342	1	30	LYS	CE	C	41.300	0.2	1
343	1	30	LYS	N	N	117.700	0.1	1
344	1	31	ARG	H	H	8.209	0.02	1
345	1	31	ARG	HA	H	4.268	0.02	1
346	1	31	ARG	HB2	H	1.860	0.02	2
347	1	31	ARG	HB3	H	1.940	0.02	2
348	1	31	ARG	HG2	H	1.620	0.02	2
349	1	31	ARG	HG3	H	1.670	0.02	2
350	1	31	ARG	HD2	H	3.064	0.02	2
351	1	31	ARG	HD3	H	3.205	0.02	2
352	1	31	ARG	HE	H	7.732	0.02	1
353	1	31	ARG	CA	C	56.635	0.2	1
354	1	31	ARG	CB	C	29.500	0.2	1
355	1	31	ARG	CG	C	26.900	0.2	1
356	1	31	ARG	CD	C	42.200	0.2	1
357	1	31	ARG	N	N	117.919	0.1	1
358	1	31	ARG	NE	N	84.188	0.1	1
359	1	32	TRP	H	H	8.306	0.02	1
360	1	32	TRP	HA	H	4.555	0.02	1
361	1	32	TRP	HB2	H	3.380	0.02	2
362	1	32	TRP	HB3	H	3.360	0.02	2
363	1	32	TRP	HD1	H	7.288	0.02	1
364	1	32	TRP	HE1	H	10.637	0.02	1
365	1	32	TRP	HE3	H	7.598	0.02	4
366	1	32	TRP	HZ2	H	7.567	0.02	4
367	1	32	TRP	HZ3	H	7.030	0.02	4
368	1	32	TRP	HH2	H	7.184	0.02	1
369	1	32	TRP	CA	C	58.527	0.2	1
370	1	32	TRP	CB	C	29.000	0.2	1
371	1	32	TRP	CD1	C	125.741	0.2	4
372	1	32	TRP	CE3	C	120.350	0.2	4
373	1	32	TRP	CZ2	C	113.920	0.2	4
374	1	32	TRP	CZ3	C	120.400	0.2	4
375	1	32	TRP	CH2	C	123.249	0.2	1
376	1	32	TRP	N	N	120.104	0.1	1
377	1	32	TRP	NE1	N	129.950	0.1	1
378	1	33	ASN	H	H	7.944	0.02	1
379	1	33	ASN	HA	H	4.564	0.02	1
380	1	33	ASN	HB2	H	2.754	0.02	2
381	1	33	ASN	HB3	H	2.428	0.02	2
382	1	33	ASN	HD21	H	7.221	0.02	2
383	1	33	ASN	HD22	H	6.683	0.02	2
384	1	33	ASN	CA	C	52.587	0.2	1
385	1	33	ASN	CB	C	39.000	0.2	1
386	1	33	ASN	N	N	117.292	0.1	1
387	1	33	ASN	ND2	N	112.106	0.1	1
388	1	34	SER	H	H	7.570	0.02	1
389	1	34	SER	HA	H	4.310	0.02	1
390	1	34	SER	HB2	H	3.939	0.02	2
391	1	34	SER	HB3	H	3.939	0.02	2
392	1	34	SER	CA	C	59.676	0.2	1
393	1	34	SER	CB	C	64.567	0.2	1
394	1	34	SER	N	N	120.408	0.1	1

Protein Blocks Logo

Calculated from 10 models in PDB: 5ZGG, Strand ID: A, B Detail

Release date

2018-06-12

Citation

The Diversity and Similarity of Transmembrane Trimerization of TNF Receptors
Goh, E., Lin, Z., Ahn, B.Y., Lopes-Rodrigues, V., Dang, N.H., Salim, S., Berger, B., Dymock, B., Senger, D.L., Ibanez, C.F.
Front. Cell Dev. Biol. (2020), 8, 569684-569684, PubMed 33163490 , DOI 10.3389/fcell.2020.569684 , Abstract

Related entities 1. Tumor necrosis factor receptor superfamily member 16, : 1 : 5 : 3 : 9 entities Detail

Interaction partners 1. Tumor necrosis factor receptor superfamily member 16, : 19 interactors Detail

More details for 19 interactors identified by 9 citations

Experiments performed 9 experiments Detail

1 2D 1H-15N HSQC

Instrument

Bruker Avance - 800 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 6.0, Details 0.8 mM [U-99% 13C; U-99% 15N] p75NTR TMD, 3.9 mM NSC49652, 200 mM [U-98% 2H] DPC, 5 % [U-99.9% 2H] DMSO, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	p75NTR TMD	[U-99% 13C; U-99% 15N]	protein	0.8 mM
2	NSC49652	natural abundance		3.9 mM
3	DMSO	[U-99.9% 2H]		5 %
4	DPC	[U-98% 2H]		200 mM
5	H2O	natural abundance	solvent	90 %
6	D2O	[U-2H]	solvent	10 %
7	phosphate buffer	natural abundance	buffer	5 mM

2 2D 1H-13C HSQC aliphatic

Instrument

Bruker Avance - 800 MHz

Sample

#	Name	Isotope labeling	Type	Concentration
1	p75NTR TMD	[U-99% 13C; U-99% 15N]	protein	0.8 mM
2	NSC49652	natural abundance		3.9 mM
3	DMSO	[U-99.9% 2H]		5 %
4	DPC	[U-98% 2H]		200 mM
5	H2O	natural abundance	solvent	90 %
6	D2O	[U-2H]	solvent	10 %
7	phosphate buffer	natural abundance	buffer	5 mM

3 2D 1H-13C HSQC aromatic

Instrument

Bruker Avance - 800 MHz

Sample

#	Name	Isotope labeling	Type	Concentration
1	p75NTR TMD	[U-99% 13C; U-99% 15N]	protein	0.8 mM
2	NSC49652	natural abundance		3.9 mM
3	DMSO	[U-99.9% 2H]		5 %
4	DPC	[U-98% 2H]		200 mM
5	H2O	natural abundance	solvent	90 %
6	D2O	[U-2H]	solvent	10 %
7	phosphate buffer	natural abundance	buffer	5 mM

4 3D HNCA

Instrument

Bruker Avance - 800 MHz

Sample

#	Name	Isotope labeling	Type	Concentration
1	p75NTR TMD	[U-99% 13C; U-99% 15N]	protein	0.8 mM
2	NSC49652	natural abundance		3.9 mM
3	DMSO	[U-99.9% 2H]		5 %
4	DPC	[U-98% 2H]		200 mM
5	H2O	natural abundance	solvent	90 %
6	D2O	[U-2H]	solvent	10 %
7	phosphate buffer	natural abundance	buffer	5 mM

5 3D HN(CO)CA

Instrument

Bruker Avance - 800 MHz

Sample

#	Name	Isotope labeling	Type	Concentration
1	p75NTR TMD	[U-99% 13C; U-99% 15N]	protein	0.8 mM
2	NSC49652	natural abundance		3.9 mM
3	DMSO	[U-99.9% 2H]		5 %
4	DPC	[U-98% 2H]		200 mM
5	H2O	natural abundance	solvent	90 %
6	D2O	[U-2H]	solvent	10 %
7	phosphate buffer	natural abundance	buffer	5 mM

6 3D HCCH-TOCSY

Instrument

Bruker Avance - 800 MHz

Sample

#	Name	Isotope labeling	Type	Concentration
1	p75NTR TMD	[U-99% 13C; U-99% 15N]	protein	0.8 mM
2	NSC49652	natural abundance		3.9 mM
3	DMSO	[U-99.9% 2H]		5 %
4	DPC	[U-98% 2H]		200 mM
5	H2O	natural abundance	solvent	90 %
6	D2O	[U-2H]	solvent	10 %
7	phosphate buffer	natural abundance	buffer	5 mM

7 2D TOCSY

Instrument

Bruker Avance - 800 MHz

Sample

#	Name	Isotope labeling	Type	Concentration
1	p75NTR TMD	[U-99% 13C; U-99% 15N]	protein	0.8 mM
2	NSC49652	natural abundance		3.9 mM
3	DMSO	[U-99.9% 2H]		5 %
4	DPC	[U-98% 2H]		200 mM
5	H2O	natural abundance	solvent	90 %
6	D2O	[U-2H]	solvent	10 %
7	phosphate buffer	natural abundance	buffer	5 mM

8 3D NOESY

Instrument

Bruker Avance - 800 MHz

Sample

#	Name	Isotope labeling	Type	Concentration
1	p75NTR TMD	[U-99% 13C; U-99% 15N]	protein	0.8 mM
2	NSC49652	natural abundance		3.9 mM
3	DMSO	[U-99.9% 2H]		5 %
4	DPC	[U-98% 2H]		200 mM
5	H2O	natural abundance	solvent	90 %
6	D2O	[U-2H]	solvent	10 %
7	phosphate buffer	natural abundance	buffer	5 mM

9 2D 1H-13C filtered NOESY

Instrument

Bruker Avance - 800 MHz

Sample

#	Name	Isotope labeling	Type	Concentration
1	p75NTR TMD	[U-99% 13C; U-99% 15N]	protein	0.8 mM
2	NSC49652	natural abundance		3.9 mM
3	DMSO	[U-99.9% 2H]		5 %
4	DPC	[U-98% 2H]		200 mM
5	H2O	natural abundance	solvent	90 %
6	D2O	[U-2H]	solvent	10 %
7	phosphate buffer	natural abundance	buffer	5 mM

NMR combined restraints 3 contents Detail

Properties

Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints	combined_36172_5zgg.nef
Input source #2: Coordindates	5zgg.cif
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	True (see coordinates for details)
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

Ptnr_site_1	Ptnr_site_2	Redox_state_prediction_1	Redox_state_prediction_2	Distance (Å)
A:256:CYS:SG	B:256:CYS:SG	oxidized, CA 58.75, CB 41.2 ppm	unknown	2.02

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

Chain_ID	Seq_ID	Comp_ID	Chem_comp_name	Experimental evidences
C	1	9F6	(2E)-1-(2-hydroxyphenyl)-3-(pyridin-3-yl)prop-2-en-1-one	None

Sequence alignments

Entity_assembly_ID (NMR): A vs Auth_asym_ID (model): A

----250-------260-------270-------
TRGTTDNLIPVYCSILAAVVVGLVAYIAFKRWNS
||||||||||||||||||||||||||||||||||
TRGTTDNLIPVYCSILAAVVVGLVAYIAFKRWNS
--------10--------20--------30----

Entity_assembly_ID (NMR): B vs Auth_asym_ID (model): B

----250-------260-------270-------
TRGTTDNLIPVYCSILAAVVVGLVAYIAFKRWNS
||||||||||||||||||||||||||||||||||
TRGTTDNLIPVYCSILAAVVVGLVAYIAFKRWNS
--------10--------20--------30----

Chain assignments

Entity_assembly_ID (NMR)	Auth_asym_ID (model)	Length	Unmapped	Conflict	Sequence coverage (%)
A	A	34	0	0	100.0
B	B	34	0	0	100.0

Content subtype: combined_36172_5zgg.nef

#	Content subtype	Saveframe	Status	# of rows (sets)	Experiment type	Sequence coverage (%)
1	Covalent bonds	assembly	OK	1		No information
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	336		100.0 (chain: A, length: 34)
1	Distance restraints	DYANA/DIANA_distance_constraints_2	Warning	1259 (1)	noe	100.0 (chain: A, length: 34), 100.0 (chain: B, length: 34)

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 34, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 184
  - ¹³C chemical shifts: 117
  - ¹⁵N chemical shifts: 35
- Completeness of assignments
  - Entity_assemble_ID: A
- Redox state of CYS
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: A

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	195	184	94.4
¹³C chemical shifts	158	117	74.1
¹⁵N chemical shifts	38	35	92.1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	69	65	94.2
¹³C chemical shifts	68	34	50.0
¹⁵N chemical shifts	33	31	93.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	126	119	94.4
¹³C chemical shifts	90	83	92.2
¹⁵N chemical shifts	5	4	80.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	29	29	100.0
¹³C chemical shifts	29	29	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	19	13	68.4
¹³C chemical shifts	18	12	66.7
¹⁵N chemical shifts	1	1	100.0

Covalent bonds

Saveframe: assembly
- Status: OK

Distance restraints

Saveframe: DYANA/DIANA_distance_constraints_2
- Status: Warning
- Experiment type: noe
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 34, Sequence coverage: 100.0%
  - Entity_assembly_ID: B, Chain length: 34, Sequence coverage: 100.0%
- Total number of restraints: 1259
- Weight of restraints: 1.0 (1259)
- Potential type of restraints: upper-bound-parabolic (1259)
- Range of distance target values: 2.8, 6.0 (Å)
- Histogram of distance target values
- Histogram of discrepancy in distance target values
- Distance restraints per residue
  - Chain_ID: A
  - Chain_ID: B
  - Chain_ID: C
    None
- Distance restraints on contact map

Keywords MEMBRANE PROTEIN, complex, transmembrane

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Found 1 Document (0.735 seconds)

BMRB: 36172

Related entities 1. Tumor necrosis factor receptor superfamily member 16, : 1 : 5 : 3 : 9 entities Detail

Interaction partners 1. Tumor necrosis factor receptor superfamily member 16, : 19 interactors Detail

Experiments performed 9 experiments Detail

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NMR combined restraints 3 contents Detail