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The NMR Structure of the Polysialyltranseferase Domain (PSTD) in Polysialyltransferase ST8siaIV
Authors
Liu, X.H., Lu, B., Peng, L.X., Liao, S.M., Zhou, F., Chen, D., Lu, Z.L., Zhou, G.P., Huang, R.B.
Assembly
CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase (E.C.2.4.99.-)
Entity
1. CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase (E.C.2.4.99.-) (polymer, Thiol state: not present), 35 monomers, 4117.929 Da Detail

LKNKLKVRTA YPSLRLIHAV RGYWLTNKVP IKRPS


Formula weight
4117.929 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chemcal Shifts
1H: 255, 13C: 119, 15N: 32 assignments Detail
IDEntity IDSeq IDComp IDAtom IDAtom typeValVal errAmbig. code
111LEUHAH3.9020.0021
211LEUHB2H1.6620.0032
311LEUHB3H1.7220.02
411LEUHGH1.7041
511LEUHD11H0.9950.0021
611LEUHD12H0.9950.0021
711LEUHD13H0.9950.0021
811LEUCAC55.1381
911LEUCBC44.0060.0011
1011LEUCGC26.6701
1112LYSHH8.0631
1212LYSHAH4.3450.0011
1312LYSHB2H1.8640.01
1412LYSHG2H1.4830.0012
1512LYSHG3H1.5460.02
1612LYSHE2H3.0350.0031
1712LYSCAC57.0061
1812LYSCBC32.9451
1912LYSNN120.9341
2013ASNHH8.5330.01
2113ASNHAH4.6890.0011
2213ASNHB2H2.8570.0062
2313ASNHB3H2.8510.0032
2413ASNHD21H6.8750.0011
2513ASNHD22H7.6990.0011
2613ASNCAC53.6601
2713ASNCBC38.6330.0161
2813ASNNN118.9481
2914LYSHH8.3250.0011
3014LYSHAH4.2630.0021
3114LYSHB2H1.8350.0031
3214LYSHG2H1.4530.0052
3314LYSHG3H1.5210.0052
3414LYSHD2H1.7400.0031
3514LYSHE2H3.0290.0031
3614LYSCAC57.4111
3714LYSCBC33.3121
3814LYSCGC24.9611
3914LYSCDC29.2251
4014LYSNN121.4281
4115LEUHH8.0610.0021
4215LEUHAH4.3110.0021
4315LEUHB2H1.7310.0022
4415LEUHB3H1.6440.0052
4515LEUHD11H0.9160.0032
4615LEUHD12H0.9160.0032
4715LEUHD13H0.9160.0032
4815LEUHD21H0.9740.0062
4915LEUHD22H0.9740.0062
5015LEUHD23H0.9740.0062
5115LEUCAC55.9951
5215LEUCBC42.2041
5315LEUNN122.9371
5416LYSHH8.0970.0051
5516LYSHAH4.2940.0031
5616LYSHB2H1.8380.0052
5716LYSHB3H1.9080.0042
5816LYSHG2H1.5180.0032
5916LYSHG3H1.4480.0052
6016LYSHD2H1.7380.0051
6116LYSHE2H3.0290.0021
6216LYSCAC56.2221
6316LYSCBC32.8591
6416LYSNN121.3311
6517VALHH7.8710.0041
6617VALHAH4.0600.0051
6717VALHBH2.1410.0041
6817VALHG11H1.0050.0042
6917VALHG12H1.0050.0042
7017VALHG13H1.0050.0042
7117VALHG21H0.9920.0052
7217VALHG22H0.9920.0052
7317VALHG23H0.9920.0052
7417VALCAC63.3011
7517VALCBC32.7211
7617VALCG1C20.7462
7717VALCG2C20.9632
7817VALNN119.6561
7918ARGHH8.2710.0021
8018ARGHAH4.3420.0021
8118ARGHB2H1.9370.012
8218ARGHB3H1.8710.0042
8318ARGHG2H1.7420.0072
8418ARGHG3H1.6820.0062
8518ARGHD2H3.2190.0031
8618ARGCBC30.7861
8718ARGCGC27.4211
8818ARGCDC43.3781
8918ARGNN122.3761
9019THRHH7.9490.0041
9119THRHAH4.3170.0021
9219THRHBH4.2440.0021
9319THRHG21H1.2160.0031
9419THRHG22H1.2160.0031
9519THRHG23H1.2160.0031
9619THRCAC62.3041
9719THRCBC69.8561
9819THRCG2C21.2951
9919THRNN113.2401
100110ALAHH8.0590.0051
101110ALAHAH4.3880.0031
102110ALAHB1H1.3950.0011
103110ALAHB2H1.3950.0011
104110ALAHB3H1.3950.0011
105110ALACAC52.6761
106110ALACBC19.2351
107110ALANN125.2101
108111TYRHH8.0290.0031
109111TYRHAH4.7140.0011
110111TYRHB2H3.0330.0022
111111TYRHB3H3.1270.0012
112111TYRHD1H7.1550.0011
113111TYRHD2H7.1550.0011
114111TYRHE1H6.8570.0031
115111TYRHE2H6.8570.0031
116111TYRCAC58.1571
117111TYRCBC37.7961
118111TYRCD1C133.1041
119111TYRCD2C133.1041
120111TYRCE1C118.1071
121111TYRCE2C118.1071
122111TYRNN119.0911
123112PROHAH4.3440.0021
124112PROHB2H2.3190.0032
125112PROHB3H1.9740.0062
126112PROHG2H2.1280.0022
127112PROHG3H2.0320.0052
128112PROHD2H3.8220.0032
129112PROHD3H3.6450.0032
130112PROCAC64.5471
131112PROCBC31.4231
132112PROCGC27.4471
133112PROCDC50.2800.0011
134113SERHH7.7290.0011
135113SERHAH4.4440.0051
136113SERHB2H4.1370.0032
137113SERHB3H3.9700.0012
138113SERCAC59.4711
139113SERCBC63.7010.0011
140113SERNN113.2091
141114LEUHH8.2910.0041
142114LEUHAH4.1600.0031
143114LEUHB2H1.5980.0042
144114LEUHB3H1.7850.0032
145114LEUHGH1.7180.0031
146114LEUHD11H0.9140.012
147114LEUHD12H0.9140.012
148114LEUHD13H0.9140.012
149114LEUHD21H0.9680.0052
150114LEUHD22H0.9680.0052
151114LEUHD23H0.9680.0052
152114LEUCAC57.7811
153114LEUCBC41.7790.0071
154114LEUNN123.3911
155115ARGHH8.0950.0071
156115ARGHAH4.0450.0031
157115ARGHB2H1.8400.0041
158115ARGHG2H1.6080.0032
159115ARGHG3H1.7140.0022
160115ARGHD2H3.1950.0061
161115ARGCAC59.1131
162115ARGCBC29.8601
163115ARGCGC27.2671
164115ARGCDC43.2101
165115ARGNN117.2801
166116LEUHH7.6040.0021
167116LEUHAH4.2530.0051
168116LEUHB2H1.9150.0062
169116LEUHB3H1.7290.0052
170116LEUHGH1.6840.0021
171116LEUHD11H0.9610.0082
172116LEUHD12H0.9610.0082
173116LEUHD13H0.9610.0082
174116LEUHD21H0.9440.0042
175116LEUHD22H0.9440.0042
176116LEUHD23H0.9440.0042
177116LEUCAC57.9201
178116LEUCBC41.8431
179116LEUNN120.4651
180117ILEHH7.9820.0011
181117ILEHAH3.6900.0011
182117ILEHBH1.9450.0021
183117ILEHG12H1.1920.0032
184117ILEHG13H1.7120.0022
185117ILEHG21H0.8710.0041
186117ILEHG22H0.8710.0041
187117ILEHG23H0.8710.0041
188117ILEHD11H0.8580.0041
189117ILEHD12H0.8580.0041
190117ILEHD13H0.8580.0041
191117ILECAC64.9261
192117ILECBC37.8751
193117ILECG1C28.7680.0011
194117ILECG2C16.6481
195117ILECD1C12.3121
196117ILENN118.4731
197118HISHH8.2740.0021
198118HISHAH4.2760.0051
199118HISHB2H3.2070.0012
200118HISHB3H3.2060.0032
201118HISHD2H6.9650.01
202118HISHE1H7.7030.0011
203118HISCAC57.1181
204118HISCBC30.4061
205118HISCD2C119.5751
206118HISCE1C137.9111
207118HISNN117.6941
208119ALAHH8.0500.0041
209119ALAHAH4.2280.0041
210119ALAHB1H1.6390.0021
211119ALAHB2H1.6390.0021
212119ALAHB3H1.6390.0021
213119ALACAC55.1441
214119ALACBC17.9911
215119ALANN122.9051
216120VALHH8.5250.0011
217120VALHAH3.8130.0021
218120VALHBH2.1900.0011
219120VALHG11H1.0650.0012
220120VALHG12H1.0650.0012
221120VALHG13H1.0650.0012
222120VALHG21H0.9360.0052
223120VALHG22H0.9360.0052
224120VALHG23H0.9360.0052
225120VALCAC66.1201
226120VALCBC31.9711
227120VALCG1C21.7002
228120VALCG2C20.7932
229120VALNN118.9411
230121ARGHH8.4550.0041
231121ARGHAH4.1270.0041
232121ARGHB2H1.8640.0042
233121ARGHB3H1.9350.0032
234121ARGHG2H1.6820.0051
235121ARGHD2H3.1300.0052
236121ARGHD3H3.1500.0042
237121ARGCAC59.3751
238121ARGCBC30.6661
239121ARGCDC43.4651
240121ARGNN119.2741
241122GLYHH8.1690.0041
242122GLYHA2H3.8720.0062
243122GLYHA3H3.8750.0052
244122GLYCAC46.8571
245122GLYNN105.4701
246123TYRHH8.1580.0051
247123TYRHAH4.2420.0031
248123TYRHB2H3.1920.0032
249123TYRHB3H3.1230.0022
250123TYRHD1H6.8730.0011
251123TYRHD2H6.8730.0011
252123TYRHE1H6.6380.0021
253123TYRHE2H6.6380.0021
254123TYRCAC61.0831
255123TYRCBC38.0991
256123TYRCD1C133.0101
257123TYRCD2C133.0101
258123TYRCE1C117.9861
259123TYRCE2C117.9861
260123TYRNN123.1411
261124TRPHH8.4350.0051
262124TRPHAH4.4050.0041
263124TRPHB2H3.4800.0022
264124TRPHB3H3.4260.0022
265124TRPHD1H7.2810.0011
266124TRPHE1H9.8630.0011
267124TRPHE3H7.6410.0021
268124TRPHZ2H7.4920.0021
269124TRPHZ3H7.1520.0051
270124TRPHH2H7.2520.0031
271124TRPCAC59.9191
272124TRPCBC29.0940.0081
273124TRPCD1C126.4601
274124TRPCE3C120.5941
275124TRPCZ2C114.5031
276124TRPCZ3C121.8681
277124TRPCH2C124.4941
278124TRPNN120.9391
279124TRPNE1N127.1161
280125LEUHH8.3640.0021
281125LEUHAH4.1720.0051
282125LEUHB2H1.8990.0042
283125LEUHB3H1.6380.0042
284125LEUHGH1.8360.0031
285125LEUHD11H0.9410.0031
286125LEUHD12H0.9410.0031
287125LEUHD13H0.9410.0031
288125LEUCAC57.2401
289125LEUCBC42.4461
290125LEUCGC27.0201
291125LEUNN118.5831
292126THRHH7.7700.0021
293126THRHAH4.2300.0011
294126THRHBH4.2830.0041
295126THRHG21H1.2650.0021
296126THRHG22H1.2650.0021
297126THRHG23H1.2650.0021
298126THRCAC63.5851
299126THRCBC69.8561
300126THRCG2C21.2501
301126THRNN109.8091
302127ASNHH7.8470.0021
303127ASNHAH4.6530.0021
304127ASNHB2H2.5070.0012
305127ASNHB3H2.6480.0012
306127ASNHD21H7.0510.0011
307127ASNHD22H6.5520.0041
308127ASNCAC54.0551
309127ASNCBC39.3170.0091
310127ASNNN118.6611
311128LYSHH8.0460.0031
312128LYSHAH4.2860.0021
313128LYSHB2H1.7240.0032
314128LYSHB3H1.8050.0072
315128LYSHG2H1.3060.0031
316128LYSHD2H1.5920.0071
317128LYSHE2H2.9440.0052
318128LYSHE3H2.9060.0022
319128LYSCAC56.1771
320128LYSCBC32.5171
321128LYSCGC24.4861
322128LYSCDC28.7151
323128LYSCEC42.2000.0011
324128LYSNN119.2971
325129VALHH7.7780.0021
326129VALHAH4.3820.0021
327129VALHBH2.0980.0041
328129VALHG11H0.9550.0072
329129VALHG12H0.9550.0072
330129VALHG13H0.9550.0072
331129VALHG21H0.9660.0022
332129VALHG22H0.9660.0022
333129VALHG23H0.9660.0022
334129VALCAC60.1051
335129VALCBC32.7561
336129VALCG1C20.5542
337129VALCG2C20.9042
338129VALNN120.2661
339130PROHAH4.4970.0031
340130PROHB2H2.2170.0012
341130PROHB3H1.9860.0032
342130PROHG2H2.0310.0041
343130PROHD2H3.6570.0032
344130PROHD3H3.8520.0042
345130PROCAC63.3181
346130PROCBC31.4810.0051
347130PROCGC27.2571
348130PROCDC50.8060.0021
349131ILEHH7.8390.0041
350131ILEHAH4.1580.0061
351131ILEHBH1.8320.0021
352131ILEHG12H1.1830.0032
353131ILEHG13H1.5020.0012
354131ILEHG21H0.9220.0071
355131ILEHG22H0.9220.0071
356131ILEHG23H0.9220.0071
357131ILEHD11H0.8850.0051
358131ILEHD12H0.8850.0051
359131ILEHD13H0.8850.0051
360131ILECAC61.0771
361131ILECBC39.3141
362131ILECG1C27.3030.0061
363131ILECG2C17.2541
364131ILENN119.9901
365132LYSHH8.1100.0021
366132LYSHAH4.3990.0021
367132LYSHB2H1.8340.0031
368132LYSHG2H1.4360.0011
369132LYSHD2H1.7360.0081
370132LYSHE2H3.0201
371132LYSCAC55.8401
372132LYSCBC32.9431
373132LYSCGC24.6991
374132LYSCDC29.1891
375132LYSCEC42.1951
376132LYSNN124.7391
377133ARGHH8.3250.0031
378133ARGHAH4.6490.0011
379133ARGHB2H1.9200.0072
380133ARGHB3H1.7870.0032
381133ARGHG2H1.7210.0011
382133ARGHD2H3.2360.0021
383133ARGHEH7.2810.0011
384133ARGCAC53.9951
385133ARGCBC30.5641
386133ARGCGC26.9291
387133ARGCDC43.4251
388133ARGNN123.8461
389134PROHAH4.4940.0021
390134PROHB2H2.3420.0032
391134PROHB3H2.0480.0022
392134PROHG2H2.0430.0042
393134PROHG3H2.1140.0012
394134PROHD2H3.8440.0022
395134PROHD3H3.6930.0022
396134PROCAC63.6391
397134PROCBC31.9610.01
398134PROCGC27.2681
399134PROCDC50.6330.0061
400135SERHH7.8540.0061
401135SERHAH4.2920.0031
402135SERHB2H3.9090.0022
403135SERHB3H3.9080.0022
404135SERCAC59.9531
405135SERCBC65.0431
406135SERNN120.9681

Protein Blocks Logo
Calculated from 20 models in PDB: 6AHZ, Strand ID: A Detail


Release date
2018-12-09
Citation
The Inhibition of Polysialyltranseferase ST8SiaIV through Heparin binding to Polysialyltransferase Domain (PSTD)
Peng, L.X., Liu, X.H., Lu, B., Liao, S.M., Zhou, F., Huang, J.M., Chen, D., Troy, F.A., Zhou, G.P., Huang, R.B.
Med. Chem. (2018), 15, 486-495, PubMed 30569872 , DOI 10.2174/1573406415666181218101623 ,
Related entities 1. CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase (E.C.2.4.99.-), : 1 : 5 : 2 : 9 entities Detail
Interaction partners 1. CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase (E.C.2.4.99.-), : 2 interactors Detail
Experiments performed 5 experiments Detail
nullKeywords Polysialic Acid, Polysialyltransferase, Polysialyltransferase Domain, SUGAR BINDING PROTEIN