BMRB: 4209

Solution NMR structures of the major coat protein of filamentous bacteriophage M13 solubilized in Dodecyl Phosphocholine micelles, 25 lowest energy structures

Authors

Papavoine, C.H.M., Christiaans, B.E.C., Folmer, R.H.A., Konings, R.N.H., Hilbers, C.W.

Assembly

M13 major coat protein

Entity

1. M13 major coat protein (polymer, Thiol state: not present), 50 monomers, 5237.973 Da Detail

AEGDDPAKAA FNSLQASATE YIGYAWAMVV VIVGATIGIK LFKKFTSKAS

Formula weight

5237.973 Da

Source organism

Escherichia virus M13

Exptl. method

NMR

Refine. method

RESTRAINED MOLECULAR DYNAMICS, SIMULATED ANNEALING, THIS VERSION OF X-PLOR WAS EXTENDED FOR FLOATING CHIRALITY

Data set

assigned_chemical_shifts, coupling_constants

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 84.5 %, Completeness (bb): 83.2 % Detail

Download

• NMR-STAR v3.1 (partial)
• BMRB/XML (partial)
• CSV
• TSV

Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	84.5 % (473 of 560)	90.8 % (257 of 283)	73.8 % (166 of 225)	96.2 % (50 of 52)
Backbone	83.2 % (248 of 298)	97.1 % (100 of 103)	69.2 % (101 of 146)	95.9 % (47 of 49)
Sidechain	87.7 % (270 of 308)	87.2 % (157 of 180)	88.0 % (110 of 125)	100.0 % (3 of 3)
Aromatic	58.6 % (34 of 58)	65.5 % (19 of 29)	50.0 % (14 of 28)	100.0 % (1 of 1)
Methyl	100.0 % (66 of 66)	100.0 % (33 of 33)	100.0 % (33 of 33)

1. M13 major coat protein

AEGDDPAKAA FNSLQASATE YIGYAWAMVV VIVGATIGIK LFKKFTSKAS

Show sample condition

Sample

Temperature 311 (±1) K, pH 4.9 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	M13 major coat protein	[U-100% 13C; U-100% 15N]		1.5 ~ 2.0 mM
2	dodecyl phosphocholine

Hide sample codition

Protein Blocks Logo

Calculated from 25 models in PDB: 2CPB, Strand ID: A Detail

---

Coupling constant

29 J values in 1 lists
Temperature 311 (±1) K, pH 4.9 (±0.2) Detail

---

Temperature 311 (±1) K, pH 4.9 (±0.2)

List #1 coupling_constants_set_1, Details Couplings not reported are not resolved due to overlap. Residue 06 is a proline residue. Data collected at both 400 and 500 MHz

Release date

2000-02-02

Citation 1

Solution structure of the M13 major coat protein in detergent micelles: A basis for a model of phage assembly involving specific residues
Papavoine, C.H.M., Christiaans, B.E.C., Folmer, R.H.A., Konings, R.N.H., Hilbers, C.W.
J. Mol. Biol. (1998), 282, 401-419, PubMed , DOI:

Show more 5 citaions

Citation 2

Location of M13 coat protein in sodium dodecyl sulfate micelles as determined by NMR
Papavoine, C.H., Konings, R.N., Hilbers, C.W., van de Ven, F.J.
Biochemistry (1994), 33, 12990-12997, PubMed 7947703 , DOI: , Abstract

Citation 3

NMR studies of the major coat protein of bacteriophage M13. Structural information of gVIIIp in dodecylphosphocholine micelles
Papavoine, C.H., Aelen, J.M., Konings, R.N., Hilbers, C.W., Van de Ven, F.J.
Eur. J. Biochem. (1995), 232, 490-500, PubMed 7556198 , DOI: , Abstract

Citation 4

Backbone dynamics of the major coat protein of bacteriophage M13 in detergent micelles by 15N nuclear magnetic resonance relaxation measurements using the model-free approach and reduced spectral density mapping
Papavoine, C.H., Remerowski, M.L., Horstink, L.M., Konings, R.N., Hilbers, C.W., van de Ven, F.J.
Biochemistry (1997), 36, 4015-4026, PubMed 9092832 , DOI 10.1021/bi962650e , Abstract

Citation 5

Assignment of 1H, 15N, and backbone 13C resonances in detergent-solubilized M13 coat protein via multinuclear multidimensional NMR: a model for the coat protein monomer
van de Ven, F.J., van Os, J.W., Aelen, J.M., Wymenga, S.S., Remerowski, M.L., Konings, R.N., Hilbers, C.W.
Biochemistry (1993), 32, 8322-8328, PubMed 8347628 , DOI: , Abstract

Citation 6

fd coat protein structure in membrane environments
McDonnell, P.A., Shon, K., Kim, Y., Opella, S.J.
J. Mol. Biol. (1993), 233, 447-463, PubMed 8411155 , DOI 10.1006/jmbi.1993.1523 , Abstract

Hide non-primary 5 citaions

Related entities 1. M13 major coat protein, : 1 : 9 : 9 : 16 entities Detail

Experiments performed 14 experiments Detail