BMRB: 4550

NMR structure of the palindromic DNA decamer d(GCGTTAACGC)2

Authors

Smith, J.A., Tsui, V.T., Chazin, W.J., Case, D.A.

Assembly

5'-D(*GP*CP*GP*TP*TP*AP*AP*CP*GP*C)-3'

Entity

1. 5'-D(*GP*CP*GP*TP*TP*AP*AP*CP*GP*C)-3' (polymer, Thiol state: not present), 10 monomers, 3107.976 × 2 Da Detail

GCGTTAACGC

Total weight

6215.952 Da

Max. entity weight

3107.976 Da

Exptl. method

NMR

Data set

assigned_chemical_shifts, coupling_constants

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 80.6 %, Completeness (bb): 88.6 % Detail

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Polymer type: polydeoxyribonucleotide

	Total	1H
All	80.6 % (79 of 98)	80.6 % (79 of 98)
Suger, PO4	88.6 % (62 of 70)	88.6 % (62 of 70)
Nucleobase	60.7 % (17 of 28)	60.7 % (17 of 28)
Aromatic	75.0 % (15 of 20)	75.0 % (15 of 20)
Methyl	100.0 % (2 of 2)	100.0 % (2 of 2)

1. 5'-d(*GP*CP*GP*TP*TP*AP*AP*CP*GP*C)-3'

GCGTTAACGC

Show sample condition

Sample

Pressure 1 atm, Temperature 300 K, pH 7

#	Name	Isotope labeling	Type	Concentration
1	5'-d(*GP*CP*GP*TP*TP*AP*AP*CP*GP*C)-3'			2 mM
2	Na3PO4			20 mM
3	NaCl			50 mM
4	NaN3			0.1 %
5	D2O			99.9 %

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Coupling constant

18 J values in 1 lists
Pressure 1 atm, Temperature 300 K, pH 7 Detail

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Pressure 1 atm, Temperature 300 K, pH 7

List #1 coupling_constants

Release date

2006-02-16

Citation

NMR Structure of the Palindromic DNA Decamer d(GCGTTAACGC)2
Smith, J.A., Tsui, V.T., Chazin, W.J., Case, D.A.

Experiments performed 3 experiments Detail