BMRB: 4612

NMR observation of a novel C-tetrad in a DNA quadruplex

Authors

Patel, P.K., Bhavesh, N.S., Hosur, R.V.

Assembly

5'-D(*TP*GP*GP*GP*CP*GP*GP*T)-3'

Entity

1. 5'-D(*TP*GP*GP*GP*CP*GP*GP*T)-3' (polymer, Thiol state: not present), 8 monomers, 2561.611 × 4 Da Detail

TGGGCGGT

Total weight

10246.444 Da

Max. entity weight

2561.611 Da

Source organism

Macaca mulatta polyomavirus 1

Exptl. method

NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 76.3 %, Completeness (bb): 83.9 % Detail

Download

• NMR-STAR v3.1 (partial)
• BMRB/XML (partial)
• CSV
• TSV

Polymer type: polydeoxyribonucleotide

	Total	1H
All	76.3 % (58 of 76)	76.3 % (58 of 76)
Suger, PO4	83.9 % (47 of 56)	83.9 % (47 of 56)
Nucleobase	55.0 % (11 of 20)	55.0 % (11 of 20)
Aromatic	56.3 % (9 of 16)	56.3 % (9 of 16)
Methyl	100.0 % (2 of 2)	100.0 % (2 of 2)

1. TGGGCGGT

TGGGCGGT

Show sample condition

Sample

Pressure 1 atm, pH 7.0

#	Name	Isotope labeling	Type	Concentration
1	TGGGCGGT			0.0 ~ 0.0 mM
2	sodium phosphate			10 mM
3	EDTA			0.2 mM
4	NaCl			200 mM
5	H2O			90 %
6	D2O			10 %

Hide sample codition

Release date

2000-12-18

Citation

NMR observation of a novel C-tetrad in the structure of the SV40 repeat sequence GGGCGG
Patel, P.K., Bhavesh, N.S., Hosur, R.V.
Biochem. Biophys. Res. Commun. (2000), 270, 967-971, PubMed 10772934 , DOI 10.1006/bbrc.2000.2479 , Abstract

Experiments performed 3 experiments Detail