BMRB: 4666

Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)

Authors

Reddy, D.V., Shenoy, B.C., Carey, P.R., Sonnichsen, F.D.

Assembly

transcarboxylase 1.3S subunit

Entity

1. TRANSCARBOXYLASE 1.3S SUBUNIT (polymer, Thiol state: not present), 77 monomers, 7811.972 Da Detail

AGAGKAGEGE IPAPLAGTVS KILVKEGDTV KAGQTVLVLE AMKMETEINA PTDGKVEKVL VKERDAVQGG QGLIKIG

2. NORBIOTIN (non-polymer), 230.284 Da

Total weight

8042.2563 Da

Max. entity weight

7811.972 Da

Entity Connection

amide 1 Detail

---

ID	Type	Value order	Atom ID 1	Atom ID 2
1	amide	sing	1:LYS43:NZ	2:SNR1:C11

Source organism

Propionibacterium freudenreichii subsp. shermanii

Exptl. method

NMR

Refine. method

DISTANCE GEOMETRY/SIMULATED ANNEALING HYBRID METHOD

Data set

assigned_chemical_shifts, coupling_constants

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 88.8 %, Completeness (bb): 81.1 % Detail

Download

• NMR-STAR v3.1 (partial)
• BMRB/XML (partial)
• CSV
• TSV

Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	88.8 % (742 of 836)	96.8 % (419 of 433)	76.3 % (248 of 325)	96.2 % (75 of 78)
Backbone	81.1 % (370 of 456)	95.7 % (156 of 163)	65.3 % (143 of 219)	95.9 % (71 of 74)
Sidechain	98.0 % (436 of 445)	97.4 % (263 of 270)	98.8 % (169 of 171)	100.0 % (4 of 4)
Methyl	96.3 % (104 of 108)	94.4 % (51 of 54)	98.1 % (53 of 54)

1. TRANSCARBOXYLASE 1.3S SUBUNIT

AGAGKAGEGE IPAPLAGTVS KILVKEGDTV KAGQTVLVLE AMKMETEINA PTDGKVEKVL VKERDAVQGG QGLIKIG

Show sample condition

Sample

Pressure 1 atm, Temperature 293 (±0.1) K, pH 6.7 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	TRANSCARBOXYLASE 1.3S SUBUNIT	[U-95%13C; U-90%15N]		1.0 ~ 2.0 mM

Hide sample codition

LACS Plot; CA

Referencing offset: 0.37 ppm, Outliers: 1 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
1H	DSS	methyl protons	0.0 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495

Hide chemical shift referencing parameters

LACS Plot; CB

Referencing offset: 0.37 ppm, Outliers: 1 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
1H	DSS	methyl protons	0.0 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495

Hide chemical shift referencing parameters

LACS Plot; HA

Referencing offset: -0.07 ppm, Outliers: 2 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
1H	DSS	methyl protons	0.0 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495

Hide chemical shift referencing parameters

Protein Blocks Logo

Calculated from 1 models in PDB: 1DCZ, Strand ID: A Detail

---

Coupling constant

47 J values in 1 lists
Pressure 1 atm, Temperature 293 (±0.1) K, pH 6.7 (±0.2) Detail

---

Pressure 1 atm, Temperature 293 (±0.1) K, pH 6.7 (±0.2)

List #1 coupling_constants

Release date

2000-05-25

Citation

High resolution solution structure of the 1.3S subunit of transcarboxylase from Propionibacterium shermanii
Reddy, D.V., Shenoy, B.C., Carey, P.R., Sonnichsen, F.D.
Biochemistry (2000), 39, 2509-2516, PubMed 10704200 , DOI: , Abstract

Related entities 1. TRANSCARBOXYLASE 1.3S SUBUNIT, : 1 : 2 : 1 : 168 entities Detail

Experiments performed 1 experiments Detail