BMRB: 4745

Solution Conformation of a Bulged Adenosine in an RNA Duplex by Relaxation Matrix Refinement

Authors

Thiviyanathan, V., Guliaev, A., Leontis, N.B., Gorenstein, D.G.

Assembly

Bulged RNA

Entity

1. RNA (polymer, Thiol state: not present), 13 monomers, 4274.554 Da Detail

GGCAGAGUGC CGC

2. RNA (polymer, Thiol state: not present), 12 monomers, 3865.300 Da Detail

GCGGCACCUG CC

Total weight

8139.8545 Da

Max. entity weight

4274.554 Da

Source organism

Escherichia coli

Exptl. method

NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete1

Sequence coverage: 52.0 %, Completeness: 39.6 %, Completeness (bb): 35.3 % Detail

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Polymer type: polyribonucleotide

	Total	1H
All	39.6 % (88 of 222)	39.6 % (88 of 222)
Suger, PO4	35.3 % (53 of 150)	35.3 % (53 of 150)
Nucleobase	48.6 % (35 of 72)	48.6 % (35 of 72)
Aromatic	51.9 % (27 of 52)	51.9 % (27 of 52)

1. RNA

GGCAGAGUGC CGC

2. RNA

GCGGCACCUG CC

Show sample condition

Sample

Temperature 298 K, pH 6.8

#	Name	Isotope labeling	Type	Concentration
1	RNA			1.0 mM
2	RNA			1.0 mM

Hide sample codition

Chem. Shift Complete2

Sequence coverage: 48.0 %, Completeness: 36.5 %, Completeness (bb): 32.3 % Detail

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• BMRB/XML (partial)
• CSV
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Polymer type: polyribonucleotide

	Total	1H
All	36.5 % (162 of 444)	36.5 % (162 of 444)
Suger, PO4	32.3 % (97 of 300)	32.3 % (97 of 300)
Nucleobase	45.1 % (65 of 144)	45.1 % (65 of 144)
Aromatic	49.0 % (51 of 104)	49.0 % (51 of 104)

1. RNA

GGCAGAGUGC CGC

2. RNA

GCGGCACCUG CC

Show sample condition

Sample

Temperature 298 K, pH 6.8

#	Name	Isotope labeling	Type	Concentration
1	RNA			1.0 mM
2	RNA			1.0 mM

Hide sample codition

Release date

2000-12-17

Citation

Solution Conformation of a Bulged Adenosine in an RNA Duplex by Relaxation Matrix Refinement
Thiviyanathan, V., Guliaev, A., Leontis, N.B., Gorenstein, D.G.
J. Mol. Biol. (2000), 300, 1143-1154

Related entities 1. RNA, : 1 entities Detail

Related entities 2. RNA, : 1 entities Detail