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1H, 15N, and 13C chemical shift assignments for DNA polymerase X
Authors
Maciejewski, M.W., Pan, B., Shin, R., Denninger, A., Mullen, G.P.
Assembly
DNA Polymerase X
Entity
1. DNA Polymerase X (polymer, Thiol state: all free), 174 monomers, 20314.16 Da Detail

MLTLIQGKKI VNHLRSRLAF EYNGQLIKIL SKNIVAVGSL RREEKMLNDV DLLIIVPEKK LLKHVLPNIR IKGLSFSVKV CGERKCVLFI EWEKKTYQLD LFTALAEEKP YAIFHFTGPV SYLIRIRAAL KKKNYKLNQY GLFKNQTLVP LKITTEKELI KELGFTYRIP KKRL


Formula weight
20314.16 Da
Source organism
African swine fever virus BA71V
Exptl. method
NMR
Refine. method
torsion angle dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 99.4 %, Completeness: 85.8 %, Completeness (bb): 95.0 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All85.8 % (1921 of 2238)85.7 % (1010 of 1179)84.2 % (738 of 877)95.1 % (173 of 182)
Backbone95.0 % (980 of 1032)96.6 % (338 of 350)93.6 % (481 of 514)95.8 % (161 of 168)
Sidechain79.7 % (1094 of 1372)81.1 % (672 of 829)77.5 % (410 of 529)85.7 % (12 of 14)
Aromatic47.5 % (76 of 160)90.0 % (72 of 80) 3.8 % (3 of 79)100.0 % (1 of 1)
Methyl89.0 % (219 of 246)90.2 % (111 of 123)87.8 % (108 of 123)

1. DNA Polymerase X

MLTLIQGKKI VNHLRSRLAF EYNGQLIKIL SKNIVAVGSL RREEKMLNDV DLLIIVPEKK LLKHVLPNIR IKGLSFSVKV CGERKCVLFI EWEKKTYQLD LFTALAEEKP YAIFHFTGPV SYLIRIRAAL KKKNYKLNQY GLFKNQTLVP LKITTEKELI KELGFTYRIP KKRL

Sample #1

Temperature 298 (±0.2) K, pH 6.5 (±0.25)


#NameIsotope labelingTypeConcentration
1DNA Polymerase X[U-13C; U-15N]0.6 ~ 1.0 mM
2PIPES20 mM
3NaCl500 mM
4DTT10 mM
5AEBSF0.5 mM
6sodium azide0.02 %
Sample #2

Temperature 298 (±0.2) K, pH 6.5 (±0.25)


#NameIsotope labelingTypeConcentration
7DNA Polymerase X[U-15N]0.6 ~ 1.0 mM
8PIPES20 mM
9NaCl500 mM
10DTT10 mM
11AEBSF0.5 mM
12sodium azide0.02 %
Sample #3

Temperature 298 (±0.2) K, pH 6.5 (±0.25)


#NameIsotope labelingTypeConcentration
13DNA Polymerase X0.6 ~ 1.0 mM
14PIPES20 mM
15NaCl500 mM
16DTT10 mM
17AEBSF0.5 mM
18sodium azide0.02 %

LACS Plot; CA
Referencing offset: -0.01 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.01 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: -0.11 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.24 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 25 models in PDB: 1JAJ, Strand ID: A Detail


Release date
2002-04-04
Citation 1
Letter to the Editor: 1H, 15N, and 13C Resonance Assignments for a 20 kDa DNA Polymerase from African Swine Fever Virus
Maciejewski, M.W., Pan, B., Shin, R., Denninger, A., Mullen, G.P.
J. Biomol. NMR (2001), 21, 177-178
Citation 2
NMRPipe: a multidimensional spectral processing system based on UNIX pipes
Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., Bax, A.
J. Biomol. NMR (1995), 6, 277-293, PubMed 8520220 , DOI 10.1007/bf00197809 ,
Citation 3
The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
Bartels, C., Xia, T., Billeter, M., Guntert, P., Wuthrich, K.
J. Biomol. NMR (1995), 6, 1-10, PubMed 22911575 , DOI 10.1007/BF00417486 ,
Citation 4
Analysis of the complete nucleotide sequence of African swine fever virus
Yanez, R.J., Rodriguez, J.M., Nogal, M.L., Yuste, L., Enriquez, C., Rodriguez, J.F., Vinuela, E.
Virology (1995), 208, 249-278, PubMed 11831707 , DOI 10.1006/viro.1995.1149 ,
Related entities 1. DNA Polymerase X, : 1 : 20 : 2 : 3 : 104 entities Detail
Experiments performed 17 experiments Detail
nullKeywords DNA repair, African swine fever virus, polymerase