BMRBj - BMREntryMaster

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BMRB: 50330

6XQC

Ubkeks

Authors

Delattre, P., Letourneau, D., Lavigne, P.

Assembly

UbKEKS

Entity

1. UbKEKS (polymer, Thiol state: not present), 76 monomers, 8538.734 Da Detail

MKIFVKTLTG KTITLEVEPS DTIENVKAKI QDEEGIPPDQ QRLIFAGKKL EDGRTLSDYS IQKESTLHLV LRLRGG

Formula weight

8538.734 Da

Source organism

Exptl. method

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 98.7 %, Completeness: 90.9 %, Completeness (bb): 96.0 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	90.9 % (827 of 910)	91.4 % (435 of 476)	90.1 % (317 of 352)	91.5 % (75 of 82)
Backbone	96.0 % (432 of 450)	96.8 % (150 of 155)	95.5 % (212 of 222)	95.9 % (70 of 73)
Sidechain	87.4 % (463 of 530)	88.8 % (285 of 321)	86.5 % (173 of 200)	55.6 % (5 of 9)
Aromatic	12.5 % (4 of 32)	25.0 % (4 of 16)	0.0 % (0 of 16)
Methyl	93.9 % (92 of 98)	93.9 % (46 of 49)	93.9 % (46 of 49)

1. entity 1

MKIFVKTLTG KTITLEVEPS DTIENVKAKI QDEEGIPPDQ QRLIFAGKKL EDGRTLSDYS IQKESTLHLV LRLRGG

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4, Details 50 mM sodium phosphate, 50 mM NaCl, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	UbKEKS	[U-100% 13C; U-100% 15N]		450 uM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	sodium phosphate	natural abundance		50 mM
5	sodium chloride	natural abundance		50 mM
6	sodium azide	natural abundance		0.02 %

Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4, Details 50 mM sodium phosphate, 50 mM NaCl, pH 7.4

#	Name	Isotope labeling	Type	Concentration
7	UbKEKS	[U-100% 13C; U-100% 15N]		450 uM
8	D2O	natural abundance		100 %
9	sodium phosphate	natural abundance		50 mM
10	sodium chloride	natural abundance		50 mM
11	sodium azide	natural abundance		0.02 %

Release date

2020-06-16

Citation

Structural and dynamic characterization of UbKEKS, a newly indentified ubiquitin encoded in a pseudogene
Delattre, P., Letourneau, D., Lavigne, P.
Not known

Related entities 1. UbKEKS, : 1 : 313 : 404 entities Detail

Interaction partners 1. UbKEKS, : 2 interactors Detail

More details for 2 interactors identified by 1 citations

Experiments performed 9 experiments Detail

1 2D 1H-15N HSQC

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4, Details 50 mM sodium phosphate, 50 mM NaCl, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	UbKEKS	[U-100% 13C; U-100% 15N]		450 uM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	sodium phosphate	natural abundance		50 mM
5	sodium chloride	natural abundance		50 mM
6	sodium azide	natural abundance		0.02 %

2 2D 1H-13C HSQC

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4, Details 50 mM sodium phosphate, 50 mM NaCl, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	UbKEKS	[U-100% 13C; U-100% 15N]		450 uM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	sodium phosphate	natural abundance		50 mM
5	sodium chloride	natural abundance		50 mM
6	sodium azide	natural abundance		0.02 %

3 3D 1H-15N NOESY

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4, Details 50 mM sodium phosphate, 50 mM NaCl, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	UbKEKS	[U-100% 13C; U-100% 15N]		450 uM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	sodium phosphate	natural abundance		50 mM
5	sodium chloride	natural abundance		50 mM
6	sodium azide	natural abundance		0.02 %

4 3D CBCA(CO)NH

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4, Details 50 mM sodium phosphate, 50 mM NaCl, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	UbKEKS	[U-100% 13C; U-100% 15N]		450 uM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	sodium phosphate	natural abundance		50 mM
5	sodium chloride	natural abundance		50 mM
6	sodium azide	natural abundance		0.02 %

5 3D HNCO

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4, Details 50 mM sodium phosphate, 50 mM NaCl, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	UbKEKS	[U-100% 13C; U-100% 15N]		450 uM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	sodium phosphate	natural abundance		50 mM
5	sodium chloride	natural abundance		50 mM
6	sodium azide	natural abundance		0.02 %

6 3D HNCACB

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4, Details 50 mM sodium phosphate, 50 mM NaCl, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	UbKEKS	[U-100% 13C; U-100% 15N]		450 uM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	sodium phosphate	natural abundance		50 mM
5	sodium chloride	natural abundance		50 mM
6	sodium azide	natural abundance		0.02 %

7 3D C(CO)NH

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4, Details 50 mM sodium phosphate, 50 mM NaCl, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	UbKEKS	[U-100% 13C; U-100% 15N]		450 uM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	sodium phosphate	natural abundance		50 mM
5	sodium chloride	natural abundance		50 mM
6	sodium azide	natural abundance		0.02 %

8 3D HCCH-TOCSY

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4, Details 50 mM sodium phosphate, 50 mM NaCl, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	UbKEKS	[U-100% 13C; U-100% 15N]		450 uM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	sodium phosphate	natural abundance		50 mM
5	sodium chloride	natural abundance		50 mM
6	sodium azide	natural abundance		0.02 %

9 3D 1H-13C NOESY

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4, Details 50 mM sodium phosphate, 50 mM NaCl, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	UbKEKS	[U-100% 13C; U-100% 15N]		450 uM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	sodium phosphate	natural abundance		50 mM
5	sodium chloride	natural abundance		50 mM
6	sodium azide	natural abundance		0.02 %

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr50330_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr50330_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	921		98.7 (chain: 1, length: 76)
1	Chemical shift references	chem_shift_reference_1	OK	3		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 76, Sequence coverage: 98.7%
- Total number of assignments
  - ¹H chemical shifts: 529
  - ¹³C chemical shifts: 317
  - ¹⁵N chemical shifts: 75
- Completeness of assignments
  - Entity_assemble_ID: 1
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1