BMRBj - BMREntryMaster

Found 1 Document (4.121 seconds)

BMRB: 5041

1IMO

Solution structure and backbone dynamics of human DNA ligase IIIalpha BRCT domain

Authors

Krishnan, V.V., Thornton, K.H., Thelen, M.P., Cosman, M.

Assembly

DNA Ligase III, BRCT domain (E.C.6.5.1.1)

Entity

1. DNA Ligase III, BRCT domain (E.C.6.5.1.1) (polymer, Thiol state: all free), 88 monomers, 9973.323 × 2 Da Detail

GSADETLCQT KVLLDIFTGV RLYLPPSTPD FSRLRRYFVA FDGDLVQEFD MTSATHVLGS RDKNPAAQQV SPEWIWACIR KRRLVAPC

Total weight

19946.646 Da

Max. entity weight

9973.323 Da

Source organism

Homo sapiens

Exptl. method

NMR

Refine. method

distance geometry, simulated annealing, torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 76.9 %, Completeness (bb): 93.2 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	76.9 % (792 of 1030)	74.5 % (398 of 534)	76.4 % (311 of 407)	93.3 % (83 of 89)
Backbone	93.2 % (481 of 516)	96.6 % (168 of 174)	88.8 % (231 of 260)	100.0 % (82 of 82)
Sidechain	64.7 % (387 of 598)	63.9 % (230 of 360)	67.5 % (156 of 231)	14.3 % (1 of 7)
Aromatic	1.1 % (1 of 94)	2.1 % (1 of 47)	0.0 % (0 of 45)	0.0 % (0 of 2)
Methyl	95.1 % (97 of 102)	98.0 % (50 of 51)	92.2 % (47 of 51)

1. DNA Ligase III

GSADETLCQT KVLLDIFTGV RLYLPPSTPD FSRLRRYFVA FDGDLVQEFD MTSATHVLGS RDKNPAAQQV SPEWIWACIR KRRLVAPC

Show sample condition

Sample

Pressure 1 atm, Temperature 288 K, pH 6.6

#	Name	Isotope labeling	Concentration
1	DNA Ligase III	[U-13C; U-15N]	1.0 mM
2	NaH2PO4		50 mM
3	NaCl		150 mM
4	DTT	[U-2H]	25 mM
5	H2O		90.0 ~ 95.0 %
6	D2O		5.0 ~ 10.0 %

Protein Blocks Logo

Calculated from 20 models in PDB: 1IN1, Strand ID: A Detail

Release date

2001-11-07

Citation

Solution structure and backbone dynamics of the human DNA ligase IIIalpha BRCT domain
Krishnan, V.V., Thornton, K.H., Thelen, M.P., Cosman, M.
Biochemistry (2001), 40, 13158-13166, PubMed 11683624 , DOI: , Abstract

Related entities 1. DNA Ligase III, BRCT domain (E.C.6.5.1.1), : 1 : 1 : 4 : 30 entities Detail

Interaction partners 1. DNA Ligase III, BRCT domain (E.C.6.5.1.1), : 63 interactors Detail

More details for 63 interactors identified by 12 citations

Experiments performed 5 experiments Detail

1 2D NOESY

Instrument

Model Varian INOVA (600 MHz)

Sample #1

Pressure 1 atm, Temperature 288 K, pH 6.6

#	Name	Isotope labeling	Concentration
1	DNA Ligase III	[U-13C; U-15N]	1.0 mM
2	NaH2PO4		50 mM
3	NaCl		150 mM
4	DTT	[U-2H]	25 mM
5	H2O		90.0 ~ 95.0 %
6	D2O		5.0 ~ 10.0 %

Sample #2

Pressure 1 atm, Temperature 288 K, pH 6.6

#	Name	Isotope labeling	Concentration
7	DNA Ligase III	[U-15N]	1.0 mM
8	NaH2PO4		50 mM
9	NaCl		150 mM
10	DTT	[U-2H]	25 mM
11	H2O		90.0 ~ 95.0 %
12	D2O		5.0 ~ 10.0 %

2 3D 13C-separated NOESY

Instrument

Model Varian INOVA (600 MHz)

Sample #1

Pressure 1 atm, Temperature 288 K, pH 6.6

#	Name	Isotope labeling	Concentration
1	DNA Ligase III	[U-13C; U-15N]	1.0 mM
2	NaH2PO4		50 mM
3	NaCl		150 mM
4	DTT	[U-2H]	25 mM
5	H2O		90.0 ~ 95.0 %
6	D2O		5.0 ~ 10.0 %

Sample #2

Pressure 1 atm, Temperature 288 K, pH 6.6

#	Name	Isotope labeling	Concentration
7	DNA Ligase III	[U-15N]	1.0 mM
8	NaH2PO4		50 mM
9	NaCl		150 mM
10	DTT	[U-2H]	25 mM
11	H2O		90.0 ~ 95.0 %
12	D2O		5.0 ~ 10.0 %

3 3D 15N-separated NOESY

Instrument

Model Varian INOVA (600 MHz)

Sample #1

Pressure 1 atm, Temperature 288 K, pH 6.6

#	Name	Isotope labeling	Concentration
1	DNA Ligase III	[U-13C; U-15N]	1.0 mM
2	NaH2PO4		50 mM
3	NaCl		150 mM
4	DTT	[U-2H]	25 mM
5	H2O		90.0 ~ 95.0 %
6	D2O		5.0 ~ 10.0 %

Sample #2

Pressure 1 atm, Temperature 288 K, pH 6.6

#	Name	Isotope labeling	Concentration
7	DNA Ligase III	[U-15N]	1.0 mM
8	NaH2PO4		50 mM
9	NaCl		150 mM
10	DTT	[U-2H]	25 mM
11	H2O		90.0 ~ 95.0 %
12	D2O		5.0 ~ 10.0 %

4 HNHA

Instrument

Model Varian INOVA (600 MHz)

Sample #1

Pressure 1 atm, Temperature 288 K, pH 6.6

#	Name	Isotope labeling	Concentration
1	DNA Ligase III	[U-13C; U-15N]	1.0 mM
2	NaH2PO4		50 mM
3	NaCl		150 mM
4	DTT	[U-2H]	25 mM
5	H2O		90.0 ~ 95.0 %
6	D2O		5.0 ~ 10.0 %

Sample #2

Pressure 1 atm, Temperature 288 K, pH 6.6

#	Name	Isotope labeling	Concentration
7	DNA Ligase III	[U-15N]	1.0 mM
8	NaH2PO4		50 mM
9	NaCl		150 mM
10	DTT	[U-2H]	25 mM
11	H2O		90.0 ~ 95.0 %
12	D2O		5.0 ~ 10.0 %

5 DQF-COSY

Instrument

Model Varian INOVA (600 MHz)

Sample #1

Pressure 1 atm, Temperature 288 K, pH 6.6

#	Name	Isotope labeling	Concentration
1	DNA Ligase III	[U-13C; U-15N]	1.0 mM
2	NaH2PO4		50 mM
3	NaCl		150 mM
4	DTT	[U-2H]	25 mM
5	H2O		90.0 ~ 95.0 %
6	D2O		5.0 ~ 10.0 %

Sample #2

Pressure 1 atm, Temperature 288 K, pH 6.6

#	Name	Isotope labeling	Concentration
7	DNA Ligase III	[U-15N]	1.0 mM
8	NaH2PO4		50 mM
9	NaCl		150 mM
10	DTT	[U-2H]	25 mM
11	H2O		90.0 ~ 95.0 %
12	D2O		5.0 ~ 10.0 %

nullKeywords parallel beta sheet

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Found 1 Document (4.121 seconds)

BMRB: 5041

Sample

Related entities 1. DNA Ligase III, BRCT domain (E.C.6.5.1.1), : 1 : 1 : 4 : 30 entities Detail

Interaction partners 1. DNA Ligase III, BRCT domain (E.C.6.5.1.1), : 63 interactors Detail

Experiments performed 5 experiments Detail

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