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1H, 13C, and 15N resonance assignments of the DNA-binding domain of the essential protein Cdc13 complexed with single-stranded telomeric DNA
Authors
Mitton-Fry, R.M., Wuttke, D.S.
Assembly
Cdc13 DNA-binding domain /telomeric ssDNA complex
Entity
1. Cdc13 DNA-binding domain (polymer, Thiol state: all free), 199 monomers, 23541.82 Da Detail

MRMSKMARKD PTIEFCQLGL DTFETKYITM FGMLVSCSFD KPAFISFVFS DFTKNDIVQN YLYDRYLIDY ENKLELNEGF KAIMYKNQFE TFDSKLRKIF NNGLRDLQNG RDENLSQYGI VCKMNIKVKM YNGKLNAIVR ECEPVPHSQI SSIASPSQCE HLRLFYQRAF KRIGESAISR YFEEYRRFFP IHRNGSHLA


2. telomeric single-stranded DNA 11mer (polymer, Thiol state: not present), 11 monomers, 3539.226 Da Detail

GTGTGGGTGT G


Total weight
27081.047 Da
Max. entity weight
23541.82 Da
Source organism
Saccharomyces cerevisiae
Exptl. method
NMR
Refine. method
distance geometry, simulated annealing, molecular dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 89.0 %, Completeness: 81.7 %, Completeness (bb): 87.5 % Detail

Polymer type: polypeptide(L) polydeoxyribonucleotide

Total1H13C15N
All81.7 % (2103 of 2573)76.9 % (1078 of 1402)87.3 % (835 of 957)88.8 % (190 of 214)
Backbone87.5 % (1101 of 1259)77.4 % (370 of 478)93.5 % (550 of 588)93.8 % (181 of 193)
Sidechain78.5 % (1180 of 1504)76.6 % (708 of 924)83.0 % (464 of 559)38.1 % (8 of 21)
Aromatic53.4 % (158 of 296)50.9 % (81 of 159)56.2 % (77 of 137)
Methyl95.0 % (171 of 180)92.4 % (85 of 92)97.7 % (86 of 88)

1. Cdc13 DNA-binding domain

MRMSKMARKD PTIEFCQLGL DTFETKYITM FGMLVSCSFD KPAFISFVFS DFTKNDIVQN YLYDRYLIDY ENKLELNEGF KAIMYKNQFE TFDSKLRKIF NNGLRDLQNG RDENLSQYGI VCKMNIKVKM YNGKLNAIVR ECEPVPHSQI SSIASPSQCE HLRLFYQRAF KRIGESAISR YFEEYRRFFP IHRNGSHLA

2. telomeric single-stranded DNA 11mer

GTGTGGGTGT G

Sample #1

Temperature 303 (±1.5) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
1Cdc13 DNA-binding domain[U-13C; U-15N]0.7 ~ 1.1 mM
2telomeric single-stranded DNA 11mer0.8 ~ 1.2 mM
3imidazole[U-2H]50 mM
4sodium chloride150 mM
5sodium sulfate100 mM
6sodium azide0.02 %
7DTT[U-2H]2 mM
Sample #2

Temperature 303 (±1.5) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
8Cdc13 DNA-binding domain[U-15N]1.5 mM
9telomeric single-stranded DNA 11mer1.7 mM
10imidazole[U-2H]50 mM
11sodium chloride150 mM
12sodium sulfate100 mM
13sodium azide0.02 %
14DTT[U-2H]2 mM
Sample #3

Temperature 303 (±1.5) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
15Cdc13 DNA-binding domain1.1 mM
16telomeric single-stranded DNA 11mer1.2 mM
17imidazole[U-2H]50 mM
18sodium chloride150 mM
19sodium sulfate100 mM
20sodium azide0.02 %
21DTT[U-2H]2 mM

LACS Plot; CA
Referencing offset: -0.19 ppm, Outliers: 1 Detail
LACS Plot; CB
Referencing offset: -0.19 ppm, Outliers: 1 Detail
LACS Plot; HA
Referencing offset: -0.03 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.02 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 10 models in PDB: 1KXL, Strand ID: A Detail


Release date
2002-08-21
Citation
1H, 13C and 15N resonance assignments of the DNA-binding domain of the essential protein Cdc13 complexed with single-stranded telomeric DNA
Mitton-Fry, R.M., Wuttke, D.S.
J. Biomol. NMR (2002), 22, 379-380, PubMed 12018489 , DOI: ,
Related entities 1. Cdc13 DNA-binding domain, : 1 : 1 : 2 entities Detail
Experiments performed 20 experiments Detail
nullKeywords cdc13, telomere-binding protein, single-stranded DNA binding protein