Search

Backbone 1H and 15N Chemical Shift Assignements for the first fibronectin type II module of MMP-2 (col-1)
Authors
Gehrmann, M., Briknarova, K., Banyai, L., Patthy, L., Llinas, M.
Assembly
first fibronectin type II module of human matrix metalloproteinase 2
Entity
1. first fibronectin type II module of human matrix metalloproteinase 2 (polymer, Thiol state: all disulfide bound), 60 monomers, 6889.564 Da Detail

RIPVKYGNAD GEYCKFPFLF NGKEYNSCTD TGRSDGFLWC STTYNFEKDG KYGFCPHEAL


Formula weight
6889.564 Da
Entity Connection
disulfide 2 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1disulfidesing1:CYS14:SG1:CYS40:SG
2disulfidesing1:CYS28:SG1:CYS55:SG

Source organism
Homo sapiens
Exptl. method
NMR
Refine. method
simulated annealing/molecular dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 98.6 %, Completeness (bb): 98.9 % Detail

Polymer type: polypeptide(L)

Total1H15N
All98.6 % (423 of 429)98.4 % (361 of 367)100.0 % (62 of 62)
Backbone98.9 % (179 of 181)98.4 % (122 of 124)100.0 % (57 of 57)
Sidechain98.4 % (244 of 248)98.4 % (239 of 243)100.0 % (5 of 5)
Aromatic100.0 % (59 of 59)100.0 % (58 of 58)100.0 % (1 of 1)
Methyl100.0 % (16 of 16)100.0 % (16 of 16)

1. the first fibronectin type II module of human matrix metalloproteinase

RIPVKYGNAD GEYCKFPFLF NGKEYNSCTD TGRSDGFLWC STTYNFEKDG KYGFCPHEAL

Sample #1

Temperature 298 (±1) K


#NameIsotope labelingTypeConcentration
1the first fibronectin type II module of human matrix metalloproteinase0.5 mM
2H2O90 %
3acetone[U-2H]10 %
Sample #2

Temperature 298 (±1) K


#NameIsotope labelingTypeConcentration
4the first fibronectin type II module of human matrix metalloproteinase0.5 mM
Sample #3

Temperature 298 (±1) K, Details The sample included the tail Leu Phe Thr Met, which wasn't present in the unlabelled sample.


#NameIsotope labelingTypeConcentration
5the first fibronectin type II module of human matrix metalloproteinase[U-15N]0.7 mM

Protein Blocks Logo
Calculated from 50 models in PDB: 1KS0, Strand ID: A Detail


Release date
2002-01-20
Citation
The col-1 module of human matrix metalloproteinase-2 (MMP-2): structural/functional relatedness between gelatin-binding fibronectin type II modules and lysine-binding kringle domains
Gehrmann, M., Briknarova, K., Banyai, L., Patthy, L., Llinas, M.
Biol. Chem. (2002), 383, 137-148, PubMed 11928808 , DOI 10.1515/BC.2002.014 ,
Related entities 1. first fibronectin type II module of human matrix metalloproteinase 2, : 1 : 172 entities Detail
Interaction partners 1. first fibronectin type II module of human matrix metalloproteinase 2, : 16 interactors Detail
Experiments performed 8 experiments Detail
nullKeywords Fibronectin type II modules, MMP-2 col-gelatin interactionn, kringle-fibronectin type II structural homology