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1H, 13C, and 15N assignment of the N-terminal, DNA-binding domain of the replication initiation protein from a geminivirus
Authors
Campos-Olivas, R., Louis, J.M., Clerot, J.M., Gronenborn, B., Gronenborn, A.M.
Assembly
N-terminal DNA-binding domain of Rep protein from a geminivirus
Entity
1. N-terminal DNA-binding domain of Rep protein from a geminivirus (polymer, Thiol state: all free), 118 monomers, 13563.13 Da Detail

SGRFSIKAKN YFLTYPKCDL TKENALSQIT NLQTPTNKLF IKICRELHEN GEPHLHILIQ FEGKYNCTNQ RFFDLVSPTR SAHFHPNIQG AKSSSDVKSY IDKDGDVLEW GTFQIDGR


Formula weight
13563.13 Da
Source organism
Tomato yellow leaf curl Sardinia virus
Exptl. method
NMR
Refine. method
torsion angle simulated anhealing
Data set
assigned_chemical_shifts, coupling_constants
Chem. Shift Complete
Sequence coverage: 99.2 %, Completeness: 91.3 %, Completeness (bb): 95.6 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All91.3 % (1300 of 1424)89.8 % (669 of 745)92.6 % (510 of 551)94.5 % (121 of 128)
Backbone95.6 % (667 of 698)95.8 % (228 of 238)95.7 % (332 of 347)94.7 % (107 of 113)
Sidechain88.6 % (742 of 837)87.0 % (441 of 507)91.1 % (287 of 315)93.3 % (14 of 15)
Aromatic72.2 % (104 of 144)75.0 % (54 of 72)69.0 % (49 of 71)100.0 % (1 of 1)
Methyl100.0 % (112 of 112)100.0 % (56 of 56)100.0 % (56 of 56)

1. N-terminal DNA-binding domain of Rep protein from a geminivirus

SGRFSIKAKN YFLTYPKCDL TKENALSQIT NLQTPTNKLF IKICRELHEN GEPHLHILIQ FEGKYNCTNQ RFFDLVSPTR SAHFHPNIQG AKSSSDVKSY IDKDGDVLEW GTFQIDGR

Sample #1

Temperature 298 (±0.5) K, pH 6.6 (±0.1)


#NameIsotope labelingTypeConcentration
1N-terminal DNA-binding domain of Rep protein from a geminivirus[10%-13C; U-99% 15N]0.8 ~ 1.0 mM
2sodium phosphate20 mM
3NaCl100 mM
4DTT1 mM
5D2O8 %
6H2O92 %
Sample #2

Temperature 298 (±0.5) K, pH 6.6 (±0.1)


#NameIsotope labelingTypeConcentration
7N-terminal DNA-binding domain of Rep protein from a geminivirus[U-13C; U-99% 15N]0.8 ~ 1.0 mM
8sodium phosphate20 mM
9NaCl100 mM
10DTT1 mM
11D2O8 %
12H2O92 %
Sample #3

Temperature 298 (±0.5) K, pH 6.6 (±0.1)


#NameIsotope labelingTypeConcentration
13N-terminal DNA-binding domain of Rep protein from a geminivirus[U-10% 13C; U-99% 15N]0.8 ~ 1.0 mM
14sodium phosphate20 mM
15NaCl100 mM
16DTT1 mM
17D2O100 %
Sample #4

Temperature 298 (±0.5) K, pH 6.6 (±0.1)


#NameIsotope labelingTypeConcentration
18N-terminal DNA-binding domain of Rep protein from a geminivirus[U-13C; U-99% 15N]0.8 ~ 1.0 mM
19sodium phosphate20 mM
20NaCl100 mM
21DTT1 mM
22D2O100 %

LACS Plot; CA
Referencing offset: 0.14 ppm, Outliers: 1 Detail
LACS Plot; CB
Referencing offset: 0.14 ppm, Outliers: 1 Detail
LACS Plot; HA
Referencing offset: -0.04 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.33 ppm, Outliers: 3 Detail
Protein Blocks Logo
Calculated from 1 models in PDB: 1L2M, Strand ID: A Detail


Coupling constant
84 J values in 1 lists
Temperature 298 (±0.5) K, pH 6.6 (±0.1) Detail
Release date
2002-09-10
Citation
The structure of a replication initiator unites diverse aspects of nucleic acid metabolism
Campos-Olivas, R., Louis, J.M., Clerot, J.M., Gronenborn, B., Gronenborn, A.M.
Proc. Natl. Acad. Sci. U. S. A. (2002), 99, 10310-10315, PubMed 12130667 , DOI 10.1073/pnas.152342699 ,
Entries sharing articles Swiss-Prot: 1 entries Detail
  Swiss-Prot: P27260 released on 1992-08-01
    Title REP_TYCSV Entity Replication-associated protein
Related entities 1. N-terminal DNA-binding domain of Rep protein from a geminivirus, : 1 : 2 : 50 entities Detail
Experiments performed 15 experiments Detail
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