BMRB: 5385

Chemical shift assignments for the 8OG:G mismatched duplex

Authors

Thiviyanathan, V., Somasunderam, A.D., Hazra, T., Mitra, S., Gorenstein, D.G.

Assembly

8oxoG:G mismatch

Entity

1. 8oxoG:G mismatch (polymer, Thiol state: not present), 12 monomers, 3766.388 × 2 Da Detail

CGCGAATTGG CG

Total weight

7532.776 Da

Max. entity weight

3766.388 Da

Source organism

Escherichia coli

Exptl. method

NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 92.2 %, Completeness (bb): 91.7 % Detail

Download

• NMR-STAR v3.1 (partial)
• BMRB/XML (partial)
• CSV
• TSV

Polymer type: polydeoxyribonucleotide

	Total	1H
All	92.2 % (107 of 116)	92.2 % (107 of 116)
Suger, PO4	91.7 % (77 of 84)	91.7 % (77 of 84)
Nucleobase	93.8 % (30 of 32)	93.8 % (30 of 32)
Aromatic	91.7 % (22 of 24)	91.7 % (22 of 24)
Methyl	100.0 % (2 of 2)	100.0 % (2 of 2)

1. DNA

CGCGAATTGG CG

Show sample condition

Sample

Temperature 298 (±1) K, pH 6.8 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	DNA			1.8 ~ 2.2 mM

Hide sample codition

Release date

2003-02-19

Citation

Solution structure of a DNA duplex containing 8-hydroxy-2'-deoxyguanosine opposite deoxyguanosine
Thiviyanathan, V., Somasunderam, A.D., Hazra, T.K., Mitra, S., Gorenstein, D.G.
J. Mol. Biol. (2003), 325, 433-442, PubMed 12498794 , DOI: , Abstract

Experiments performed 5 experiments Detail