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BMRB: 5498

1K4U

Backbone and Sidechain 1H, 13C, and 15N Chemical Shift Assigments for Complex between p67SH3(C) and p47 Tail Peptide

Authors

Kami, K., Takeya, R., Sumimoto, H., Kohda, D.

Assembly

p67SH3(C) and p47 tail peptide

Entity

1. Src homology 3 (polymer, Thiol state: not present), 64 monomers, 7075.793 Da Detail

GSQLKKGSQV EALFSYEATQ PEDLEFQEGD IILVLSKVNE EWLEGESKGK VGIFPKVFVE DSAT

2. C-terminal region of p47phox (polymer, Thiol state: all free), 33 monomers, 3474.984 Da Detail

GSKPQPAVPP RPSADLILNR CSESTKRKLA SAV

Total weight

10550.777 Da

Max. entity weight

7075.793 Da

Source organism

Homo sapiens

Exptl. method

NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete1

Sequence coverage: 68.0 %, Completeness: 64.3 %, Completeness (bb): 67.1 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	64.3 % (719 of 1119)	65.4 % (384 of 587)	62.7 % (272 of 434)	64.3 % (63 of 98)
Backbone	67.1 % (381 of 568)	67.0 % (130 of 194)	66.9 % (190 of 284)	67.8 % (61 of 90)
Sidechain	61.6 % (395 of 641)	64.6 % (254 of 393)	57.9 % (139 of 240)	25.0 % (2 of 8)
Aromatic	46.7 % (28 of 60)	90.0 % (27 of 30)	0.0 % (0 of 29)	100.0 % (1 of 1)
Methyl	70.2 % (73 of 104)	71.2 % (37 of 52)	69.2 % (36 of 52)

1. Src homology 3

GSQLKKGSQV EALFSYEATQ PEDLEFQEGD IILVLSKVNE EWLEGESKGK VGIFPKVFVE DSAT

2. C-terminal region of p47phox

GSKPQPAVPP RPSADLILNR CSESTKRKLA SAV

Show sample condition

Sample

Temperature 298 (±0.1) K, pH 7.1 (±0.5)

#	Name	Isotope labeling	Type	Concentration
1	Src homology 3	[U-98% 13C; U-98% 15N]		0.5 ~ 0.7 mM
2	C-terminal region of p47phox	[U-98% 13C; U-98% 15N]		0.5 ~ 0.7 mM

Chem. Shift Complete2

Sequence coverage: 43.3 %, Completeness: 51.6 %, Completeness (bb): 54.0 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	51.6 % (1155 of 2238)	52.2 % (613 of 1174)	51.0 % (443 of 868)	50.5 % (99 of 196)
Backbone	54.0 % (613 of 1136)	53.9 % (209 of 388)	54.0 % (307 of 568)	53.9 % (97 of 180)
Sidechain	49.7 % (637 of 1282)	51.4 % (404 of 786)	48.1 % (231 of 480)	12.5 % (2 of 16)
Aromatic	23.3 % (28 of 120)	45.0 % (27 of 60)	0.0 % (0 of 58)	50.0 % (1 of 2)
Methyl	54.3 % (113 of 208)	53.8 % (56 of 104)	54.8 % (57 of 104)

1. Src homology 3

GSQLKKGSQV EALFSYEATQ PEDLEFQEGD IILVLSKVNE EWLEGESKGK VGIFPKVFVE DSAT

2. C-terminal region of p47phox

GSKPQPAVPP RPSADLILNR CSESTKRKLA SAV

Show sample condition

Sample

Temperature 298 (±0.1) K, pH 7.1 (±0.5)

#	Name	Isotope labeling	Type	Concentration
1	Src homology 3	[U-98% 13C; U-98% 15N]		0.5 ~ 0.7 mM
2	C-terminal region of p47phox	[U-98% 13C; U-98% 15N]		0.5 ~ 0.7 mM

Protein Blocks Logo

Calculated from 22 models in PDB: 1K4U, Strand ID: P, S Detail

Release date

2002-08-21

Citation 1

Diverse recognition of non-PxxP peptide ligands by the SH3 domains from p67(phox), Grb2 and Pex13p
Kami, K., Takeya, R., Sumimoto, H., Kohda, D.
EMBO J. (2002), 21, 4268-4276, PubMed 12169629 , DOI: , Abstract

Show more 2 citaions

Citation 2

NMRPipe: a multidimensional spectral processing system based on UNIX pipes
Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., Bax, A.
J. Biomol. NMR (1995), 6, 277-293, PubMed 8520220 , Abstract

Citation 3

Recommendations for the presentation of NMR structures of proteins and nucleic acids
Markley, J.L., Bax, A., Arata, Y., Hilbers, C.W., Kaptein, R., Sykes, B.D., Wright, P.E., Wuthrich, K.
J. Mol. Biol. (1998), 280, 933-952, PubMed 9671561 , DOI 10.1006/jmbi.1998.1852 , Abstract

Hide non-primary 2 citaions

Related entities 1. Src homology 3, : 2 : 239 entities Detail

Related entities 2. C-terminal region of p47phox, : 1 : 6 : 5 entities Detail

Interaction partners 1. Src homology 3, : 13 : 1 interactors Detail

More details for 14 interactors identified by 9 citations

Interaction partners 2. C-terminal region of p47phox, : 11 : 1 interactors Detail

More details for 12 interactors identified by 10 citations

Experiments performed 15 experiments Detail

1 HNCA