BMRBj - BMREntryMaster

Found 1 Document (1.471 seconds)

BMRB: 5706

1NY9

Antibiotic binding domain of a TipA-class multidrug resistance transcriptional regulator

Authors

Kahmann, J.D., Sass, H., Allan, M.G., Seto, H., Thompson, C.J., Grzesiek, S.

Assembly

TipAS

Entity

1. TipAS (polymer, Thiol state: not reported), 143 monomers, 16431.72 Da Detail

GINLTPEEKF EVFGDFDPDQ YEEEVRERWG NTDAYRQSKE KTASYTKEDW QRIQDEADEL TRRFVALMDA GEPADSEGAM DAAEDHRQGI ARNHYDCGYE MHTCLGEMYV SDERFTRNID AAKPGLAAYM RDAILANAVR HTP

Formula weight

16431.72 Da

Source organism

Streptomyces lividans

Exptl. method

NMR

Refine. method

simulated annealing with torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 81.1 %, Completeness: 54.8 %, Completeness (bb): 72.2 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	54.8 % (885 of 1614)	49.9 % (420 of 841)	57.6 % (359 of 623)	70.7 % (106 of 150)
Backbone	72.2 % (612 of 848)	70.3 % (204 of 290)	72.9 % (306 of 420)	73.9 % (102 of 138)
Sidechain	41.0 % (369 of 900)	38.8 % (214 of 551)	45.1 % (152 of 337)	25.0 % (3 of 12)
Aromatic	10.3 % (15 of 146)	15.1 % (11 of 73)	5.6 % (4 of 71)	0.0 % (0 of 2)
Methyl	65.8 % (75 of 114)	70.2 % (40 of 57)	61.4 % (35 of 57)

1. Transcriptional activator tipA

GINLTPEEKF EVFGDFDPDQ YEEEVRERWG NTDAYRQSKE KTASYTKEDW QRIQDEADEL TRRFVALMDA GEPADSEGAM DAAEDHRQGI ARNHYDCGYE MHTCLGEMYV SDERFTRNID AAKPGLAAYM RDAILANAVR HTP

Show sample condition

Sample #1

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Transcriptional activator tipA	[U-15N]		1.5 mM

Sample #2

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	Transcriptional activator tipA	[U-13C; U-15N]		1.5 mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: -0.26 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: -0.26 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: 0.04 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: -0.86 ppm, Outliers: 1 Detail

Protein Blocks Logo

Calculated from 10 models in PDB: 1NY9, Strand ID: A Detail

Release date

2003-05-21

Citation

Structural basis for antibiotic recognition by the TipA class of multidrug-resistance transcriptional regulators
Kahmann, J.D., Sass, H., Allan, M.G., Seto, H., Thompson, C.J., Grzesiek, S.
EMBO J. (2003), 22, 1824-1834, PubMed 12682015 , DOI 10.1093/emboj/cdg181 , Abstract

Related entities 1. TipAS, : 1 : 3 : 5 entities Detail

Experiments performed 9 experiments Detail

1 HNCA

Instrument

#1 Model Bruker Bruker (600 MHz)

#2 Model Bruker Bruker (800 MHz)

Sample #1

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Transcriptional activator tipA	[U-15N]		1.5 mM

Sample #2

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	Transcriptional activator tipA	[U-13C; U-15N]		1.5 mM

2 HN(CO)CA

Instrument

#1 Model Bruker Bruker (600 MHz)

#2 Model Bruker Bruker (800 MHz)

Sample #1

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Transcriptional activator tipA	[U-15N]		1.5 mM

Sample #2

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	Transcriptional activator tipA	[U-13C; U-15N]		1.5 mM

3 HN(CA)CO

Instrument

#1 Model Bruker Bruker (600 MHz)

#2 Model Bruker Bruker (800 MHz)

Sample #1

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Transcriptional activator tipA	[U-15N]		1.5 mM

Sample #2

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	Transcriptional activator tipA	[U-13C; U-15N]		1.5 mM

4 HNCO

Instrument

#1 Model Bruker Bruker (600 MHz)

#2 Model Bruker Bruker (800 MHz)

Sample #1

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Transcriptional activator tipA	[U-15N]		1.5 mM

Sample #2

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	Transcriptional activator tipA	[U-13C; U-15N]		1.5 mM

5 CBCACONH

Instrument

#1 Model Bruker Bruker (600 MHz)

#2 Model Bruker Bruker (800 MHz)

Sample #1

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Transcriptional activator tipA	[U-15N]		1.5 mM

Sample #2

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	Transcriptional activator tipA	[U-13C; U-15N]		1.5 mM

6 CBCANH

Instrument

#1 Model Bruker Bruker (600 MHz)

#2 Model Bruker Bruker (800 MHz)

Sample #1

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Transcriptional activator tipA	[U-15N]		1.5 mM

Sample #2

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	Transcriptional activator tipA	[U-13C; U-15N]		1.5 mM

7 HCCH-TOCSY

Instrument

#1 Model Bruker Bruker (600 MHz)

#2 Model Bruker Bruker (800 MHz)

Sample #1

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Transcriptional activator tipA	[U-15N]		1.5 mM

Sample #2

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	Transcriptional activator tipA	[U-13C; U-15N]		1.5 mM

8 1H-15N NOESY

Instrument

#1 Model Bruker Bruker (600 MHz)

#2 Model Bruker Bruker (800 MHz)

Sample #1

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Transcriptional activator tipA	[U-15N]		1.5 mM

Sample #2

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	Transcriptional activator tipA	[U-13C; U-15N]		1.5 mM

9 1H-13C NOESY

Instrument

#1 Model Bruker Bruker (600 MHz)

#2 Model Bruker Bruker (800 MHz)

Sample #1

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Transcriptional activator tipA	[U-15N]		1.5 mM

Sample #2

Temperature 298 (±0.5) K, pH 5.9 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	Transcriptional activator tipA	[U-13C; U-15N]		1.5 mM

nullKeywords Antibiotic recognition, globin fold, heteronuclear NMR, protein dynamics

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Found 1 Document (1.471 seconds)

BMRB: 5706

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Chemical shift reference

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. TipAS, : 1 : 3 : 5 entities Detail

Experiments performed 9 experiments Detail

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