Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
ID | Type | Value order | Atom ID 1 | Atom ID 2 |
---|---|---|---|---|
1 | na | sing | 1:CYS9:SG | 3:ZN1:ZN |
2 | na | sing | 1:CYS18:SG | 3:ZN1:ZN |
3 | na | sing | 1:CYS24:SG | 3:ZN1:ZN |
4 | na | sing | 1:HIS28:NE2 | 3:ZN1:ZN |
5 | na | sing | 1:CYS47:SG | 3:ZN1:ZN |
6 | na | sing | 1:CYS56:SG | 3:ZN1:ZN |
7 | na | sing | 1:CYS62:SG | 3:ZN1:ZN |
8 | na | sing | 1:HIS66:NE2 | 3:ZN1:ZN |
Polymer type: polypeptide(L) polyribonucleotide
Total | 1H | 13C | 15N | |
---|---|---|---|---|
All | 78.4 % (775 of 989) | 81.3 % (423 of 520) | 72.6 % (286 of 394) | 88.0 % (66 of 75) |
Backbone | 77.5 % (396 of 511) | 70.8 % (138 of 195) | 77.6 % (194 of 250) | 97.0 % (64 of 66) |
Sidechain | 81.4 % (442 of 543) | 87.7 % (285 of 325) | 74.2 % (155 of 209) | 22.2 % (2 of 9) |
Aromatic | 42.8 % (71 of 166) | 55.4 % (46 of 83) | 32.9 % (25 of 76) | 0.0 % (0 of 7) |
Methyl | 100.0 % (42 of 42) | 100.0 % (21 of 21) | 100.0 % (21 of 21) |
1. TIS11d TZF
STRYKTELCR PFEESGTCKY GEKCQFAHGF HELRSLTRHP KYKTELCRTF HTIGFCPYGP RCHFIHNADE2. 5'-UUAUUUAUU-3'
UUAUUUAUUTemperature 298 (±0.5) K, pH 6.2 (±0.1)
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | TIS11d TZF | [U-15N] | 0.5 mM | |
2 | 5'-UUAUUUAUU-3' | 0.5 mM | ||
3 | TrisHCl | 10 mM | ||
4 | KCl | 20 mM | ||
5 | DTT | 2.5 mM | ||
6 | ZnSO4 | 25 uM | ||
7 | H20 | 95 % | ||
8 | D2O | 5 % |
Temperature 298 (±0.5) K, pH 6.2 (±0.1)
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
17 | TIS11d TZF | [U-13C; U-15N] | 0.5 mM | |
18 | 5'-UUAUUUAUU-3' | 0.5 mM | ||
19 | Tris-HCl | 10 mM | ||
20 | KCl | 20 mM | ||
21 | DTT | 2.5 mM | ||
22 | ZnSO4 | 25 uM | ||
23 | D2O | 100 % |
Polymer type: polypeptide(L) polyribonucleotide
Total | 1H | 13C | 15N | |
---|---|---|---|---|
All | 46.9 % (928 of 1978) | 49.5 % (515 of 1040) | 42.4 % (334 of 788) | 52.7 % (79 of 150) |
Backbone | 46.2 % (472 of 1022) | 43.8 % (171 of 390) | 44.8 % (224 of 500) | 58.3 % (77 of 132) |
Sidechain | 48.9 % (531 of 1086) | 52.9 % (344 of 650) | 44.3 % (185 of 418) | 11.1 % (2 of 18) |
Aromatic | 29.2 % (97 of 332) | 40.4 % (67 of 166) | 19.7 % (30 of 152) | 0.0 % (0 of 14) |
Methyl | 64.3 % (54 of 84) | 64.3 % (27 of 42) | 64.3 % (27 of 42) |
1. TIS11d TZF
STRYKTELCR PFEESGTCKY GEKCQFAHGF HELRSLTRHP KYKTELCRTF HTIGFCPYGP RCHFIHNADE2. 5'-UUAUUUAUU-3'
UUAUUUAUUTemperature 298 (±0.5) K, pH 6.2 (±0.1)
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | TIS11d TZF | [U-15N] | 0.5 mM | |
2 | 5'-UUAUUUAUU-3' | 0.5 mM | ||
3 | TrisHCl | 10 mM | ||
4 | KCl | 20 mM | ||
5 | DTT | 2.5 mM | ||
6 | ZnSO4 | 25 uM | ||
7 | H20 | 95 % | ||
8 | D2O | 5 % |
Temperature 298 (±0.5) K, pH 6.2 (±0.1)
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
17 | TIS11d TZF | [U-13C; U-15N] | 0.5 mM | |
18 | 5'-UUAUUUAUU-3' | 0.5 mM | ||
19 | Tris-HCl | 10 mM | ||
20 | KCl | 20 mM | ||
21 | DTT | 2.5 mM | ||
22 | ZnSO4 | 25 uM | ||
23 | D2O | 100 % |