BMRB: 6186

Structure of DNA sequence d-TGATCA by two-dimensional nuclear magnetic resonance spec and restrained molecular dynamics

Authors

Barthwal, R., Awasthi, P., Narang, M., Sharma, U., Srivastava, N.

Assembly

5'-D(P*TP*GP*AP*TP*CP*A)-3'

Entity

1. 5'-D(P*TP*GP*AP*TP*CP*A)-3' (polymer, Thiol state: not present), 6 monomers, 1871.202 × 2 Da Detail

TGATCA

Total weight

3742.404 Da

Max. entity weight

1871.202 Da

Exptl. method

NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 81.0 %, Completeness (bb): 100.0 % Detail

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Polymer type: polydeoxyribonucleotide

	Total	1H
All	81.0 % (47 of 58)	81.0 % (47 of 58)
Suger, PO4	100.0 % (42 of 42)	100.0 % (42 of 42)
Nucleobase	31.3 % (5 of 16)	31.3 % (5 of 16)
Aromatic	41.7 % (5 of 12)	41.7 % (5 of 12)
Methyl	0.0 % (0 of 2)	0.0 % (0 of 2)

1. TGATCA

TGATCA

Show sample condition

Sample

Pressure 1 atm, Temperature 295 K, pH 7.0

#	Name	Isotope labeling	Type	Concentration
1	TGATCA			7.36 mM
2	phosphate buffer			20 mM
3	NaCl			15 mM
4	D2O			100 %

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Release date

2004-11-07

Citation

Structure of DNA sequence d-TGATCA by two-dimensional nuclear magnetic resonance spectroscopy and restrained molecular dynamics
Barthwal, R., Awasthi, P., Monica, Kaur, M., Sharma, U., Srivastava, N., Barthwal, S.K., Govil, G.
J. Struct. Biol. (2004), 148, 34-50, PubMed 15363786 , DOI 10.1016/j.jsb.2004.05.005 , Abstract

Experiments performed 2 experiments Detail