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Structure and Biochemical Function of a Prototypical Arabidopsis U-box Domain
Authors
Andersen, P., Kragelund, B.B., Olsen, A.N., Larsen, F.H., Chua, N., Poulsen, F.M., Skriver, K.
Assembly
armadillo repeat and U-box containing protein
Entity
1. armadillo repeat and U-box containing protein (polymer, Thiol state: all free), 78 monomers, 8753.919 Da Detail

GSPEFPEYFR CPISLELMKD PVIVSTGQTY ERSSIQKWLD AGHKTCPKSQ ETLLHAGLTP NYVLKSLIAL WCESNGIE


Formula weight
8753.919 Da
Source organism
Arabidopsis thaliana
Exptl. method
NMR
Refine. method
torsion angle dynamics, simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 96.2 %, Completeness: 80.1 %, Completeness (bb): 76.3 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All80.1 % (735 of 918)85.6 % (409 of 478)72.9 % (263 of 361)79.7 % (63 of 79)
Backbone76.3 % (348 of 456)89.0 % (138 of 155)65.9 % (151 of 229)81.9 % (59 of 72)
Sidechain85.4 % (457 of 535)83.9 % (271 of 323)88.8 % (182 of 205)57.1 % (4 of 7)
Aromatic65.8 % (50 of 76)65.8 % (25 of 38)66.7 % (24 of 36)50.0 % (1 of 2)
Methyl92.9 % (78 of 84)92.9 % (39 of 42)92.9 % (39 of 42)

1. PUB14

GSPEFPEYFR CPISLELMKD PVIVSTGQTY ERSSIQKWLD AGHKTCPKSQ ETLLHAGLTP NYVLKSLIAL WCESNGIE

Sample

Pressure 1 atm, Temperature 298 K, pH 7.5


#NameIsotope labelingTypeConcentration
1PUB14[U-15N; U-13C]0.9 mM
2sodium phosphate20 mM
3NaCl0.15 M
4DTT1 mM
5D2010 %
6H2090 %

LACS Plot; CA
Referencing offset: -0.27 ppm, Outliers: 1 Detail
LACS Plot; CB
Referencing offset: -0.27 ppm, Outliers: 1 Detail
LACS Plot; HA
Referencing offset: -0.03 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 1T1H, Strand ID: A Detail


Release date
2005-02-07
Citation
Structure and biochemical function of a prototypical Arabidopsis U-box domain
Andersen, P., Kragelund, B.B., Olsen, A.N., Larsen, F.H., Chua, N., Poulsen, F.M., Skriver, K.
J. Biol. Chem. (2004), 279, 40053-40061, PubMed 15231834 , DOI 10.1074/jbc.M405057200 ,
Related entities 1. armadillo repeat and U-box containing protein, : 1 : 2 : 218 entities Detail
Interaction partners 1. armadillo repeat and U-box containing protein, : 15 interactors Detail
Experiments performed 10 experiments Detail
nullKeywords ARABIDOPSIS, E3 LIGASE, NMR, UBIQUITIN LIGASE, U-BOX