BMRB: 6384

Solution Structure of TACI_D2

Authors

Hymowitz, S.G., Patel, D.R., Wallweber, H.J.A., Runyon, S.T., Yan, M., Yin, J., Shriver, S.K., Gordon, N.C., Pan, B., Skelton, N.J., Kelley, R.F., Starovasnik, M.A.

Assembly

Tumor necrosis factor receptor superfamily member 13B

Entity

1. Tumor necrosis factor receptor superfamily member 13B (polymer, Thiol state: all disulfide bound), 46 monomers, 5308.065 Da Detail

GSPWSLSCRK EQGKFYDHLL RDCISCASIC GQHPKQCAYF CENKLR

Formula weight

5308.065 Da

Entity Connection

disulfide 3 Detail

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ID	Type	Value order	Atom ID 1	Atom ID 2
1	disulfide	sing	1:CYS8:SG	1:CYS23:SG
2	disulfide	sing	1:CYS26:SG	1:CYS37:SG
3	disulfide	sing	1:CYS30:SG	1:CYS41:SG

Source organism

Homo sapiens

Exptl. method

NMR

Refine. method

THE FINAL STRUCTURES WERE CALCULATED USING THE PROGRAM CNX (VERSION 2002; ACCELRYS, SAN DIEGO, CA).

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 78.1 %, Completeness (bb): 76.1 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	78.1 % (425 of 544)	82.3 % (237 of 288)	71.0 % (147 of 207)	83.7 % (41 of 49)
Backbone	76.1 % (207 of 272)	89.2 % (83 of 93)	65.2 % (88 of 135)	81.8 % (36 of 44)
Sidechain	82.5 % (260 of 315)	79.0 % (154 of 195)	87.8 % (101 of 115)	100.0 % (5 of 5)
Aromatic	73.2 % (41 of 56)	71.4 % (20 of 28)	74.1 % (20 of 27)	100.0 % (1 of 1)
Methyl	100.0 % (28 of 28)	100.0 % (14 of 14)	100.0 % (14 of 14)

1. TACI D2

GSPWSLSCRK EQGKFYDHLL RDCISCASIC GQHPKQCAYF CENKLR

Show sample condition

Sample

Pressure 1 atm, Temperature 290 K, pH 7.2

#	Name	Isotope labeling	Type	Concentration
1	TACI_D2	[U-13C; U-15N]		0.8 ~ 1.0 mM
2	sodium phosphate			50 mM
3	sodium chloride			150 mM
4	sodium azide			1 mM
5	D2O			10 %

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LACS Plot; CA

Referencing offset: 0.36 ppm, Outliers: 1 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	external	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	external	indirect	0.1013291

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LACS Plot; CB

Referencing offset: 0.36 ppm, Outliers: 1 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	external	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	external	indirect	0.1013291

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LACS Plot; HA

Referencing offset: 0.05 ppm, Outliers: 1 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	external	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	external	indirect	0.1013291

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Protein Blocks Logo

Calculated from 20 models in PDB: 1XUT, Strand ID: A Detail

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Release date

2004-11-09

Citation

Structures of APRIL-receptor complexes: like BCMA, TACI employs only a single cysteine-rich domain for high affinity ligand binding
Hymowitz, S.G., Patel, D.R., Wallweber, H.J.A., Runyon, S.T., Yan, M., Yin, J., Shriver, S.K., Gordon, N.C., Pan, B., Skelton, N.J., Kelley, R.F., Starovasnik, M.A.
J. Biol. Chem. (2005), 280, 7218-7227, PubMed 15542592 , DOI 10.1074/jbc.M411714200 , Abstract

Related entities 1. Tumor necrosis factor receptor superfamily member 13B, : 1 : 3 : 12 entities Detail

Interaction partners 1. Tumor necrosis factor receptor superfamily member 13B, : 11 interactors Detail

Experiments performed 5 experiments Detail