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Solution structure of the hypothetical protein ytfP from Escherichia coli. Northeast Structural Genomics target ER111.
Authors
Aramini, J.M., Huang, Y.J., Swapna, G.V.T., Paranji, R.K., Xiao, R., Shastry, R., Acton, T.B., Cort, J.R., Kennedy, M.A., Montelione, G.T.
Assembly
Hypothetical UPF0131 protein ytfP
Entity
1. Hypothetical UPF0131 protein ytfP (polymer, Thiol state: not present), 121 monomers, 13931.37 Da Detail

MRIFVYGSLR HKQGNSHWMT NAQLLGDFSI DNYQLYSLGH YPGAVPGNGT VHGEVYRIDN ATLAELDALR TRGGEYARQL IQTPYGSAWM YVYQRPVDGL KLIESGDWLD RDKLEHHHHH H


Formula weight
13931.37 Da
Source organism
Escherichia coli
Exptl. method
NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts, coupling_constants
Chem. Shift Complete
Sequence coverage: 95.0 %, Completeness: 90.9 %, Completeness (bb): 91.4 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All90.9 % (1285 of 1414)91.1 % (666 of 731)90.6 % (500 of 552)90.8 % (119 of 131)
Backbone91.4 % (656 of 718)90.4 % (227 of 251)92.6 % (324 of 350)89.7 % (105 of 117)
Sidechain89.7 % (721 of 804)90.0 % (432 of 480)88.7 % (275 of 310)100.0 % (14 of 14)
Aromatic75.0 % (126 of 168)75.0 % (63 of 84)74.1 % (60 of 81)100.0 % (3 of 3)
Methyl94.2 % (113 of 120)93.3 % (56 of 60)95.0 % (57 of 60)

1. Hypothetical UPF0131 protein ytfP

MRIFVYGSLR HKQGNSHWMT NAQLLGDFSI DNYQLYSLGH YPGAVPGNGT VHGEVYRIDN ATLAELDALR TRGGEYARQL IQTPYGSAWM YVYQRPVDGL KLIESGDWLD RDKLEHHHHH H

Sample

Pressure 1 atm, Temperature 293 K, pH 5.5


#NameIsotope labelingTypeConcentration
1Hypothetical UPF0131 protein ytfP[U-13C; U-15N]1.3 mM
2NH4OAC20 mM
3CACL25 mM
4NaCL0.1 M
5DTT10 mM
6NAN30.02 %
7D2O5 %
8H2O95 %

LACS Plot; CA
Referencing offset: -0.07 ppm, Outliers: 6 Detail
LACS Plot; CB
Referencing offset: -0.07 ppm, Outliers: 6 Detail
LACS Plot; HA
Referencing offset: -0.04 ppm, Outliers: 2 Detail
LACS Plot; CO
Referencing offset: 0.1 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 10 models in PDB: 1XHS, Strand ID: A Detail


Coupling constant
61 J values in 1 lists
Pressure 1 atm, Temperature 293 K, pH 5.5 Detail
Release date
2005-06-11
Citation
1H, 13C, and 15N Resonance Assignments for Escherichia coli ytfP, a Member of the Broadly Conserved UPF0131 Protein Domain Family
Aramini, J.M., Swapna, G.V.T., Huang, Y.J., Rajan, P.K., Xiao, R., Shastry, R., Acton, T.B., Cort, J.R., Kennedy, M.A., Montelione, G.T.
J. Biomol. NMR (2005), 33, 197-197, PubMed , DOI:
Related entities 1. Hypothetical UPF0131 protein ytfP, : 1 : 2 : 10 entities Detail
Experiments performed 19 experiments Detail
nullKeywords ER111, NMR structure, AUTOSTRUCTURE, Northeast Structural Genomics Consortium, NESG, Protein Structure Initiative, PSI, Structural Genomics