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Sequence-specific 1H, 13C and 15N resonance assignments of the winged-helix domain of the human Werner syndrome protein
Authors
Sun, J., Feng, H., Lin, G., Zeng, W., Hu, J.
Assembly
Werner syndrome protein
Entity
1. Werner syndrome protein (polymer, Thiol state: all free), 144 monomers, 16333.45 Da Detail

MDDSEDTSWD FGPQAFKLLS AVDILGEKFG IGLPILFLRG SNSQRLADQY RRHSLFGTGK DQTESWWKAF SRQLITGGFL VEVSRYNKFM KICALTKKGR NWLHKANTES QSLILQANEE LCPKKLLLPS SKTVSSGTKE HCYN


Formula weight
16333.45 Da
Source organism
Homo sapiens
Exptl. method
NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 80.8 %, Completeness (bb): 94.9 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All80.8 % (1395 of 1727)72.9 % (658 of 903)88.9 % (593 of 667)91.7 % (144 of 157)
Backbone94.9 % (812 of 856)92.5 % (273 of 295)97.6 % (411 of 421)91.4 % (128 of 140)
Sidechain71.0 % (713 of 1004)63.5 % (386 of 608)82.1 % (311 of 379)94.1 % (16 of 17)
Aromatic51.2 % (84 of 164)51.2 % (42 of 82)48.7 % (38 of 78)100.0 % (4 of 4)
Methyl88.7 % (126 of 142)90.1 % (64 of 71)87.3 % (62 of 71)

1. The winged-helix domain of WRN

MDDSEDTSWD FGPQAFKLLS AVDILGEKFG IGLPILFLRG SNSQRLADQY RRHSLFGTGK DQTESWWKAF SRQLITGGFL VEVSRYNKFM KICALTKKGR NWLHKANTES QSLILQANEE LCPKKLLLPS SKTVSSGTKE HCYN

Sample #1

Temperature 295 (±1) K, pH 7.36 (±0.2)


#NameIsotope labelingTypeConcentration
1The winged-helix domain of WRN[U-95% 15N]0.45 mM
2potassium phosphate buffer25 mM
3NaCl25 mM
4EDTA1 mM
5NaZ30.05 %
Sample #2

Temperature 295 (±1) K, pH 7.36 (±0.2)


#NameIsotope labelingTypeConcentration
6The winged-helix domain of WRN[U-98% 15N]0.45 mM
7potassium phosphate buffer25 mM
8NaCl25 mM
9EDTA1 mM
10NaZ30.05 %
Sample #3

Temperature 295 (±1) K, pH 7.36 (±0.2)


#NameIsotope labelingTypeConcentration
11The winged-helix domain of WRN[U-95% 13C; U-95% 15N]0.45 mM
12potassium phosphate buffer25 mM
13NaCl25 mM
14EDTA1 mM
15NaZ30.05 %

LACS Plot; CA
Referencing offset: -0.13 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.13 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: 0.1 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: -0.16 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 10 models in PDB: 2AXL, Strand ID: A Detail


Release date
2005-08-28
Citation 1
NMR assignments of the winged-helix domain of human werner syndrome protein
Sun, J., Feng, H., Lin, G., Zeng, W., Hu, J.
J. Biomol. NMR (2005), 32, 261-261, PubMed 16132834 , DOI 10.1007/s10858-005-7960-6 ,
Citation 2
Positional cloning of the Werner's syndrome gene
Yu, C.E., Oshima, J., Fu, Y.H., Wijsman, E.M., Hisama, F., Alisch, R., Matthews, S., Nakura, J., Miki, T., Ouais, S., Martin, G.M., Mulligan, J., Schellenberg, G.D.
Science (1996), 272, 258-262, PubMed 8602509 ,
Citation 3
RecQ helicases: suppressors of tumorigenesis and premature aging
Bachrati, C.Z., Hickson, I.D.
Biochem. J. (2003), 374, 577-606, PubMed 12803543 , DOI 10.1042/BJ20030491 ,
Citation 4
A putative nucleic acid-binding domain in Bloom's and Werner's syndrome helicases
Morozov, V., Mushegian, A.R., Koonin, E.V., Bork, P.
Trends. Biochem. Sci. (1997), 22, 417-418, PubMed 9397680 ,
Citation 5
Structure and function of RecQ DNA helicases
Bennett, R.J., Keck, J.L.
Crit. Rev. Biochem. Mol. Biol. (2004), 39, 79-97, PubMed 15217989 , DOI 10.1080/10409230490460756 ,
Citation 6
Pathways and functions of the Werner syndrome protein
Lee, J.W., Harrigan, J., Opresko, P.L., Bohr, V.A.
Mech. Ageing Dev. (2005), 126, 79-86, PubMed 15610765 , DOI 10.1016/j.mad.2004.09.011 ,
Citation 7
Werner helicase is localized to transcriptionally active nucleoli of cycling cells
Gray, M.D., Wang, L., Youssoufian, H., Martin, G.M., Oshima, J.
Exp. Cell Res. (1998), 242, 487-494, PubMed 9683536 , DOI 10.1006/excr.1998.4124 ,
Related entities 1. Werner syndrome protein, : 1 : 3 : 7 entities Detail
Interaction partners 1. Werner syndrome protein, : 32 interactors Detail
Experiments performed 21 experiments Detail
nullKeywords NMR assignments, Werner syndrome protein, WRN, nucleolar targeting sequence, RQC domain, winged-helix, WH domain