Search

assignment of mouse socs3 by NMR
Authors
Babon, J.J., Yao, S., deSouza, D.P., Harrison, C.F., Fabri, L.J., Liepinsch, E., Otting, G., Baca, M., Norton, R.S.
Assembly
socs3 bound to a phosphotyrosine peptide
Entity
1. mouse socs3 (polymer, Thiol state: all free), 164 monomers, 17942.06 Da Detail

LKTFSSKSEY QLVVNAVRKL QESGFYWSAV TGGEANLLLS AEPAGTFLIR DSSDQRHFFT LSVKTQSGTK NLRIQCEGGS FSLQSDPRST QPVPRFDCVL KLVHHYMPPP GTPSFSLPPT EPSSEVPEQP PAQALPGSTP KRAYYIYSGG EKIPLVLSRP LSSN


2. gp130 phosphopeptide (polymer, Thiol state: not present), 15 monomers, 1604.564 Da Detail

STASTVEXST VVHSG


Total weight
19546.625 Da
Max. entity weight
17942.06 Da
Source organism
Mus musculus
Exptl. method
NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 87.7 %, Completeness: 64.6 %, Completeness (bb): 82.2 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All64.6 % (1308 of 2026)62.4 % (658 of 1054)63.2 % (504 of 798)83.9 % (146 of 174)
Backbone82.2 % (848 of 1032)81.4 % (285 of 350)81.0 % (423 of 522)87.5 % (140 of 160)
Sidechain50.8 % (589 of 1160)53.1 % (374 of 704)47.3 % (209 of 442)42.9 % (6 of 14)
Aromatic39.7 % (62 of 156)67.9 % (53 of 78)10.4 % (8 of 77)100.0 % (1 of 1)
Methyl73.9 % (133 of 180)82.2 % (74 of 90)65.6 % (59 of 90)

1. mouse socs3

LKTFSSKSEY QLVVNAVRKL QESGFYWSAV TGGEANLLLS AEPAGTFLIR DSSDQRHFFT LSVKTQSGTK NLRIQCEGGS FSLQSDPRST QPVPRFDCVL KLVHHYMPPP GTPSFSLPPT EPSSEVPEQP PAQALPGSTP KRAYYIYSGG EKIPLVLSRP LSSN

2. gp130 phosphopeptide

STASTVEXST VVHSG

Sample

Temperature 298 (±0.1) K, pH 6.7 (±0.1)


#NameIsotope labelingTypeConcentration
1mouse socs3[U-13C; U-15N]0.4 ~ 0.5 mM
2gp130 phosphopeptide[U-13C; U-15N]0.4 ~ 0.5 mM
3water0.0 ~ 0.0 mM
4glutamic acid50 mM
5arginine50 mM

LACS Plot; CA
Referencing offset: -0.04 ppm, Outliers: 3 Detail
LACS Plot; CB
Referencing offset: -0.04 ppm, Outliers: 3 Detail
LACS Plot; HA
Referencing offset: 0.03 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.49 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 2BBU, Strand ID: A, B Detail


Release date
2005-12-15
Citation
Secondary structure assignment of mouse SOCS3 by NMR defines the domain boundaries and identifies an unstructured insertion in the SH2 domain
Babon, J.J., Yao, S., deSouza, D.P., Harrison, C.F., Fabri, L.J., Liepinsh, E., Scrofani, S.D., Baca, M., Norton, R.S.
FEBS J. (2005), 272, 6120-6130, PubMed 16302975 , DOI 10.1111/j.1742-4658.2005.05010.x ,
Related entities 1. mouse socs3, : 1 : 5 entities Detail
Related entities 2. gp130 phosphopeptide, : 1 : 1 : 4 entities Detail
Interaction partners 2. gp130 phosphopeptide, : 9 interactors Detail
Experiments performed 12 experiments Detail
nullKeywords cytokine signalling, Kinase, NMR, PEST sequence, SH2 domain, SOCS