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Solution structure of the NOD1 Caspase Activating and Recruitment Domain
Authors
Manon, F., Favier, A., Simorre, J.P., Cusack, S.
Assembly
Caspase recruitment domain protein 4
Entity
1. Caspase recruitment domain protein 4 (polymer, Thiol state: all free), 127 monomers, 14502.43 Da Detail

GAMESHPHIQ LLKSNRELLV THIRNTQCLV DNLLKNDYFS AEDAEIVCAC PTQPDKVRKI LDLVQSKGEE VSEFFLYLLQ QLADAYVDLR PWLLEIGFSP SLLTQSKVVV NTDPVSRYTQ QLRHHLG


Formula weight
14502.43 Da
Source organism
Homo sapiens
Exptl. method
NMR
Refine. method
simulated annealing, torsion angle dynamics, refinement in explicit water
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 80.3 %, Completeness: 73.3 %, Completeness (bb): 77.3 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All73.3 % (1109 of 1513)72.4 % (568 of 785)74.2 % (439 of 592)75.0 % (102 of 136)
Backbone77.3 % (580 of 750)77.4 % (195 of 252)76.7 % (289 of 377)79.3 % (96 of 121)
Sidechain70.7 % (626 of 886)70.0 % (373 of 533)73.1 % (247 of 338)40.0 % (6 of 15)
Aromatic57.7 % (60 of 104)57.7 % (30 of 52)58.8 % (30 of 51) 0.0 % (0 of 1)
Methyl74.4 % (125 of 168)75.0 % (63 of 84)73.8 % (62 of 84)

1. Caspase recruitment domain protein 4

GAMESHPHIQ LLKSNRELLV THIRNTQCLV DNLLKNDYFS AEDAEIVCAC PTQPDKVRKI LDLVQSKGEE VSEFFLYLLQ QLADAYVDLR PWLLEIGFSP SLLTQSKVVV NTDPVSRYTQ QLRHHLG

Sample

Pressure 1 atm, Temperature 303 (±0.1) K, pH 7 (±0.1)


#NameIsotope labelingTypeConcentration
1Caspase recruitment domain protein 4[U-95% 13C; U-90% 15N]1.4 mM
2phosphate buffer25 mM
3NaCl100 mM
4DTT5 mM
5H2O95 %
6D2O5 %

LACS Plot; CA
Referencing offset: -0.18 ppm, Outliers: 3 Detail
LACS Plot; CB
Referencing offset: -0.18 ppm, Outliers: 3 Detail
LACS Plot; HA
Referencing offset: 0.01 ppm, Outliers: 2 Detail
LACS Plot; CO
Referencing offset: -0.86 ppm, Outliers: 2 Detail
Protein Blocks Logo
Calculated from 10 models in PDB: 2B1W, Strand ID: A Detail


Release date
2006-11-05
Citation
Solution structure of NOD1 CARD and mutational analysis of its interaction with the CARD of downstream kinase RICK
Manon, F., Favier, A., Nunez, G., Simorre, J.P., Cusack, S.
J. Mol. Biol. (2007), 365, 160-174, PubMed 17054981 , DOI 10.1016/j.jmb.2006.09.067 ,
Related entities 1. Caspase recruitment domain protein 4, : 2 : 11 entities Detail
Interaction partners 1. Caspase recruitment domain protein 4, : 27 interactors Detail
Experiments performed 8 experiments Detail
nullKeywords CARD4, Caspase recruitment domain, greek key, inflammation, NF-kB, six-helix bundle