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BMRB: 6971

2DJK

NMR assignment of the b' domain of thermophilic fungal protein disulfide isomerase

Authors

Nakano, M., Murakami, C., Yamaguchi, Y., Sasakawa, H., Harada, T., Kurimoto, E., Asami, O., Kajino, T., Kato, K.

Assembly

PDI-b'

Entity

1. PDI-b' (polymer, Thiol state: not present), 133 monomers, 14489.21 Da Detail

GPLGSPLIGE IGPETYSDYM SAGIPLAYIF AETAEERKEL SDKLKPIAEA QRGVINFGTI DAKAFGAHAG NLNLKTDKFP AFAIQEVAKN QKFPFDQEKE ITFEAIKAFV DDFVAGKIEP SIKSEPIPEK QEG

Formula weight

14489.21 Da

Source organism

Humicola insolens

Exptl. method

NMR

Refine. method

distance geometry simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 97.0 %, Completeness: 83.5 %, Completeness (bb): 95.5 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	83.5 % (1297 of 1554)	85.3 % (693 of 812)	77.7 % (474 of 610)	98.5 % (130 of 132)
Backbone	95.5 % (743 of 778)	95.5 % (255 of 267)	94.6 % (367 of 388)	98.4 % (121 of 123)
Sidechain	74.8 % (672 of 898)	80.4 % (438 of 545)	65.4 % (225 of 344)	100.0 % (9 of 9)
Aromatic	43.8 % (56 of 128)	79.7 % (51 of 64)	7.8 % (5 of 64)
Methyl	86.2 % (119 of 138)	87.0 % (60 of 69)	85.5 % (59 of 69)

1. PDI-b'

GPLGSPLIGE IGPETYSDYM SAGIPLAYIF AETAEERKEL SDKLKPIAEA QRGVINFGTI DAKAFGAHAG NLNLKTDKFP AFAIQEVAKN QKFPFDQEKE ITFEAIKAFV DDFVAGKIEP SIKSEPIPEK QEG

Show sample condition

Sample

Temperature 310 (±1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	PDI-b'	[U-13C; U-15N]		1 mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: 0.02 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: 0.02 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: 0.01 ppm, Outliers: 2 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: -0.14 ppm, Outliers: 1 Detail

Protein Blocks Logo

Calculated from 10 models in PDB: 2DJK, Strand ID: A Detail

Release date

2006-08-06

Citation

NMR assignments of the b' and a' domains of thermophilic fungal protein disulfide isomerase
Nakano, M., Murakami, C., Yamaguchi, Y., Sasakawa, H., Harada, T., Kurimoto, E., Asami, O., Kajino, T., Kato, K.
J. Biomol. NMR (2006), 36 Suppl 1, 44-44, PubMed 16819589 , DOI 10.1007/s10858-006-9016-y , Abstract

Related entities 1. PDI-b', : 1 : 4 : 34 entities Detail

Experiments performed 16 experiments Detail

1 1H15N HSQC