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1H, 13C, 15N assignments of an independently folded C-terminal domain of influenza polymerase subunit PB2
Authors
Boudet, J., Bougault, C.M., Simorre, J.
Assembly
DPDE
Entity
1. DPDE (polymer, Thiol state: not present), 83 monomers, 8972.145 × 2 Da Detail

GDPDESTSGV ESAVLRGFLI LGKEDRRYGP ALSINELSNL AKGEKANVLI GQGDVVLVMK RKRDSSILTD SQTATKRIRM AIN


Total weight
17944.29 Da
Max. entity weight
8972.145 Da
Source organism
Influenza A virus (A/Victoria/3/1975(H3N2))
Exptl. method
NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts, coupling_constants, heteronucl_NOEs, heteronucl_T1_relaxation, heteronucl_T2_relaxation
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 96.9 %, Completeness (bb): 97.4 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All96.9 % (903 of 932)95.9 % (467 of 487)98.3 % (352 of 358)96.6 % (84 of 87)
Backbone97.4 % (481 of 494)95.9 % (165 of 172)98.8 % (238 of 241)96.3 % (78 of 81)
Sidechain96.7 % (496 of 513)95.9 % (302 of 315)97.9 % (188 of 192)100.0 % (6 of 6)
Aromatic83.3 % (15 of 18)100.0 % (9 of 9)66.7 % (6 of 9)
Methyl99.0 % (103 of 104)98.1 % (51 of 52)100.0 % (52 of 52)

1. DPDE-trans

GDPDESTSGV ESAVLRGFLI LGKEDRRYGP ALSINELSNL AKGEKANVLI GQGDVVLVMK RKRDSSILTD SQTATKRIRM AIN

Sample #1

Temperature 283 (±0.5) K, pH 7.5 (±0.1), Details Sample contains 75% of P3-trans form and 25% of P3-cis form at pH = 7.5 at 10C in H2O 90%/ D2O 10%


#NameIsotope labelingTypeConcentration
1DPDE-trans[U-13C; U-15N]protein0.45 (±0.05) mM
2DPDE-cis[U-13C; U-15N]protein0.15 (±0.05) mM
3sodium chloridesalt200 mM
4Tris pH = 7.5buffer50 mM
5H2O90 %
6D2O10 %
Sample #2

Temperature 283 (±0.5) K, pH 7.5 (±0.1), Details Same sample as before in D2O 99.9%


#NameIsotope labelingTypeConcentration
7DPDE-trans[U-95% 13C; U-90% 15N]protein0.45 (±0.05) mM
8DPDE-cis[U-95% 13C; U-90% 15N]protein0.15 (±0.05) mM
9sodium chloridesalt200 mM
10Tris pH = 7.5buffer50 mM
11D2O99.9 %

LACS Plot; CA
Referencing offset: -0.2 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.2 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: -0.02 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.17 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 10 models in PDB: 2GMO, Strand ID: A Detail


Heteronucl. T1
68 T1 values in 1 lists
Coherence Sz, Field strength (1H) 600 MHz, Temperature 283 (±0.5) K, pH 7.5 (±0.1) Detail
Heteronucl. T2
69 T2 values in 1 lists
Coherence S(+,-), Field strength (1H) 600 MHz, Temperature 283 (±0.5) K, pH 7.5 (±0.1) Detail
Heteronucl. T
70 T values in 1 lists
Coherence S(+,-), Field strength (1H) 600 MHz, Temperature 283 (±0.5) K, pH 7.5 (±0.1) Detail
Heteronucl. NOE
69 NOE values in 1 lists
Value type relative intensities, Field strength (1H) 600 MHz, Temperature 283 (±0.5) K, pH 7.5 (±0.1) Detail
Heteronucl. T1/T2
68 T1/T2 values in 1 lists
Field strength (1H) 600 MHz, Temperature 283 (±0.5) K, pH 7.5 (±0.1) Detail
Coupling constant
56 J values in 1 lists
Temperature 283 (±0.5) K, pH 7.5 (±0.1) Detail
Release date
2007-03-08
Citation
Structure and nuclear import function of the C-terminal domain of influenza virus polymerase PB2 subunit
Tarendeau, F., Boudet, J., Guiligay, D., Mas, P., Bougault, C.M., Boulo, S., Baudin, F., Ruigrok, R.W., Daigle, N., Ellenberg, J., Cusack, S., Simorre, J., Hart, D.J.
Nat. Struct. Mol. Biol. (2007), 14, 229-233, PubMed 17310249 , DOI 10.1038/nsmb1212 ,
Related entities 1. DPDE, : 1 : 1 : 28 : 85 entities Detail
Interaction partners 1. DPDE, : 6 interactors Detail
Experiments performed 22 experiments Detail
nullKeywords ESPRIT, Influenza, PB2, RNA-polymerase