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1H, 15N, 13C resonance assignments for bb' domains of human protein disulfide isomerase (PDI)
Authors
Denisov, A., Maattanen, P., Thomas, D., Gehring, K.
Assembly
bb-PDI monomer
Entity
1. bb-PDI monomer (polymer, Thiol state: all free), 228 monomers, 25533.63 × 2 Da Detail

GPLGSPAATT LPDGAAAESL VESSEVAVIG FFKDVESDSA KQFLQAAEAI DDIPFGITSN SDVFSKYQLD KDGVVLFKKF DEGRNNFEGE VTKENLLDFI KHNQLPLVIE FTEQTAPKIF GGEIKTHILL FLPKSVSDYD GKLSNFKTAA ESFKGKILFI FIDSDHTDNQ RILEFFGLKK EECPAVRLIT LEEEMTKYKP ESEELTAERI TEFCHRFLEG KIKPHLMS


Total weight
51067.26 Da
Max. entity weight
25533.63 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 99.6 %, Completeness: 70.1 %, Completeness (bb): 97.3 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All70.1 % (1896 of 2705)70.2 % (987 of 1405)64.8 % (693 of 1069)93.5 % (216 of 231)
Backbone97.3 % (1311 of 1348)96.5 % (444 of 460)97.3 % (652 of 670)98.6 % (215 of 218)
Sidechain50.9 % (799 of 1571)57.6 % (544 of 945)41.4 % (254 of 613) 7.7 % (1 of 13)
Aromatic 7.0 % (17 of 244) 8.2 % (10 of 122) 5.7 % (7 of 122)
Methyl54.8 % (138 of 252)88.9 % (112 of 126)20.6 % (26 of 126)

1. bb-PDI

GPLGSPAATT LPDGAAAESL VESSEVAVIG FFKDVESDSA KQFLQAAEAI DDIPFGITSN SDVFSKYQLD KDGVVLFKKF DEGRNNFEGE VTKENLLDFI KHNQLPLVIE FTEQTAPKIF GGEIKTHILL FLPKSVSDYD GKLSNFKTAA ESFKGKILFI FIDSDHTDNQ RILEFFGLKK EECPAVRLIT LEEEMTKYKP ESEELTAERI TEFCHRFLEG KIKPHLMS

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 7.0


#NameIsotope labelingTypeConcentration
1bb-PDI[U-100% 13C; U-100% 15N]2 mM
2sodium phosphatenatural abundance25 mM
3sodium chloridenatural abundance70 mM
4EDTAnatural abundance0.5 mM
5DTTnatural abundance5 mM
Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 303 K, pH 7.0


#NameIsotope labelingTypeConcentration
6bb-PDI[U-100% 13C; U-100% 15N]2 mM
7sodium phosphatenatural abundance25 mM
8sodium chloridenatural abundance70 mM
9EDTAnatural abundance0.5 mM
10DTTnatural abundance5 mM

Release date
2007-08-07
Citation
1H, 13C and 15N resonance assignments of the bb' domains of human protein disulfide isomerase
Denisov, A., Maattanen, P., Sprules, T., Thomas, D.Y., Gehring, K.
Biomol. NMR Assign. (2007), 1, 129-130, PubMed 19636846 , DOI 10.1007/s12104-007-9035-y ,
Related entities 1. bb-PDI monomer, : 1 : 1 : 5 : 122 entities Detail
Interaction partners 1. bb-PDI monomer, : 82 interactors Detail
Experiments performed 7 experiments Detail
Chemical shift validation 3 contents Detail
Keywords disulfide bonds, endoplasmic reticulum, NMR, PDI, protein folding