BMRB: 16301

intrinsically unfolded alpha-synuclein variant SaS

Authors

Rao, J., Kim, Y.E., Park, L.S., Ulmer, T.S.

Assembly

monomer

Entity

1. monomer (polymer, Thiol state: not present), 140 monomers, 14459.97 Da Detail

MDVFMKGLEK TKEQVTNVGS KTKEGVVHGV GAVVTGVTAV AEKTKQGVAE AAATVASKAK EGVVAAAGKT KEGVLYVGQK TVEGAGSIAA ATGFVKKDQL GKNEEGAPQE GILEDMPVDP DNEAYEMPSE EGYQDYEPEA

Formula weight

14459.97 Da

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 92.1 %, Completeness: 34.8 %, Completeness (bb): 61.4 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	34.8 % (522 of 1498)	19.3 % (149 of 771)	41.9 % (244 of 583)	89.6 % (129 of 144)
Backbone	61.4 % (510 of 830)	47.1 % (138 of 293)	60.4 % (243 of 402)	95.6 % (129 of 135)
Sidechain	15.2 % (120 of 790)	2.3 % (11 of 478)	36.0 % (109 of 303)	0.0 % (0 of 9)
Aromatic	0.0 % (0 of 56)	0.0 % (0 of 28)	0.0 % (0 of 28)
Methyl	10.8 % (17 of 158)	1.3 % (1 of 79)	20.3 % (16 of 79)

1. SaS

MDVFMKGLEK TKEQVTNVGS KTKEGVVHGV GAVVTGVTAV AEKTKQGVAE AAATVASKAK EGVVAAAGKT KEGVLYVGQK TVEGAGSIAA ATGFVKKDQL GKNEEGAPQE GILEDMPVDP DNEAYEMPSE EGYQDYEPEA

Show sample condition

Sample

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 288.2 K, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	SaS	[U-100% 13C; U-100% 15N; U-80% 2H]		0.5 mM
2	H2O	natural abundance		95 %
3	D2O	natural abundance		5 %
4	HEPES NaCl	natural abundance		25 mM
5	NaCl	natural abundance		50 mM
6	NaN3	natural abundance		0.02 %

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LACS Plot; CA

Referencing offset: 0.47 ppm, Outliers: 2 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	water	protons	4.868 ppm	internal	indirect	0.2514495
1H	water	protons	4.868 ppm	internal	direct	1.0
15N	water	protons	4.868 ppm	internal	indirect	0.101329

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LACS Plot; CB

Referencing offset: 0.47 ppm, Outliers: 2 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	water	protons	4.868 ppm	internal	indirect	0.2514495
1H	water	protons	4.868 ppm	internal	direct	1.0
15N	water	protons	4.868 ppm	internal	indirect	0.101329

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Release date

2009-06-02

Citation

Effect of pseudorepeat rearrangement on alpha-synuclein misfolding, vesicle binding, and micelle binding
Rao, J., Kim, Y.E., Park, L.S., Ulmer, T.S.
J. Mol. Biol. (2009), 390, 516-529, PubMed 19481090 , DOI 10.1016/j.jmb.2009.05.058 , Abstract

Related entities 1. monomer, : 154 entities Detail

Experiments performed 4 experiments Detail

Chemical shift validation 3 contents Detail