BMRBj - BMREntryMaster

Found 1 Document (0.765 seconds)

BMRB: 16325

2KJK

Chemical shift assignments of the second domain of the listeria protein Lin2157, Northeast Structural Genomics Consortium target Lkr136b

Authors

Wang, X., Hamilton, K., Xiao, R.H., Lee, D., Ciccosanti, C.H., Nair, R., Rost, B., Acton, T.B., Swapna, G., Everett, J.K., Montelione, G.T., Prestegard, J.H.

Assembly

lkr136b

Entity

1. lkr136b (polymer, Thiol state: not present), 100 monomers, 11058.37 Da Detail

MVKVTYDGVY VLSVKEDVPA AGILHAGDLI TEIDGQSFKS SQEFIDYIHS KKVGDTVKIK YKHGNKNEEA SIKLTAIDKK GTPGIGITLV DDLEHHHHHH

Formula weight

11058.37 Da

Source organism

Listeria innocua

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts, RDCs

Chem. Shift Complete

Sequence coverage: 97.0 %, Completeness: 80.8 %, Completeness (bb): 94.1 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	80.8 % (930 of 1151)	73.3 % (434 of 592)	88.2 % (403 of 457)	91.2 % (93 of 102)
Backbone	94.1 % (561 of 596)	92.8 % (192 of 207)	94.8 % (276 of 291)	94.9 % (93 of 98)
Sidechain	70.7 % (457 of 646)	62.9 % (242 of 385)	83.7 % (215 of 257)	0.0 % (0 of 4)
Aromatic	40.9 % (36 of 88)	43.2 % (19 of 44)	38.6 % (17 of 44)
Methyl	87.7 % (107 of 122)	86.9 % (53 of 61)	88.5 % (54 of 61)

1. lkr136b

MVKVTYDGVY VLSVKEDVPA AGILHAGDLI TEIDGQSFKS SQEFIDYIHS KKVGDTVKIK YKHGNKNEEA SIKLTAIDKK GTPGIGITLV DDLEHHHHHH

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 4.5

#	Name	Isotope labeling	Concentration
1	lkr136b	[U-100% 13C; U-100% 15N]	1.18 mM
2	DTT	natural abundance	10 mM
3	sodium azide	natural abundance	0.02 %
4	sodium chloride	natural abundance	200 mM
5	sodium acetate	natural abundance	20 mM
6	calcium chloride	natural abundance	5 mM
7	H2O	natural abundance	90 %
8	D2O	natural abundance	10 %

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 4.5

#	Name	Isotope labeling	Concentration
9	lkr136b	[U-100% 13C; U-100% 15N]	1.18 mM
10	pentaethylene glycol monododecyl ether	natural abundance	4 %
11	sodium chloride	natural abundance	200 mM
12	sodium azide	natural abundance	0.02 %
13	DTT	natural abundance	10 mM
14	sodium acetate	natural abundance	20 mM
15	calcium chloride	natural abundance	5 mM
16	H2O	natural abundance	90 %
17	D2O	natural abundance	10 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.15 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.15 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.03 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.32 ppm, Outliers: 4 Detail

Protein Blocks Logo

Calculated from 10 models in PDB: 2KJK, Strand ID: A Detail

RDC

71 RDC values in 1 lists
Field strength (¹H) 600 MHz, Pressure 1 atm, Temperature 298 K, pH 4.5 Detail

Release date

2009-06-10

Citation

Solution Structure of Lkr136b
Wang, X., Montelione, G., Prestegard, J.
Not known

Related entities 1. lkr136b, : 1 : 12 entities Detail

Experiments performed 9 experiments Detail

1 2D 1H-15N HSQC