human CEB25 minisatellite G-quadruplex
Polymer type: polydeoxyribonucleotide
Total | 1H | 31P | |
---|---|---|---|
All | 91.4 % (244 of 267) | 90.9 % (219 of 241) | 96.2 % (25 of 26) |
Suger, PO4 | 93.8 % (195 of 208) | 93.4 % (170 of 182) | 96.2 % (25 of 26) |
Nucleobase | 83.1 % (49 of 59) | 83.1 % (49 of 59) | |
Aromatic | 80.8 % (42 of 52) | 80.8 % (42 of 52) | |
Methyl | 100.0 % (7 of 7) | 100.0 % (7 of 7) |
1. DNA (26-MER)
AAGGGTGGGT GTAAGTGTGG GTGGGTSolvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.00
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | DNA (26-MER) | natural abundance | 0.2 ~ 2.0 mM | |
2 | H2O | natural abundance | 90 % | |
3 | D2O | natural abundance | 10 % |
Bruker AMX - 400 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.00
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | DNA (26-MER) | natural abundance | 0.2 ~ 2.0 mM | |
2 | H2O | natural abundance | 90 % | |
3 | D2O | natural abundance | 10 % |
Bruker AMX - 400 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.00
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | DNA (26-MER) | natural abundance | 0.2 ~ 2.0 mM | |
2 | H2O | natural abundance | 90 % | |
3 | D2O | natural abundance | 10 % |
Bruker AMX - 400 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.00
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | DNA (26-MER) | natural abundance | 0.2 ~ 2.0 mM | |
2 | H2O | natural abundance | 90 % | |
3 | D2O | natural abundance | 10 % |
Bruker AMX - 400 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.00
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | DNA (26-MER) | natural abundance | 0.2 ~ 2.0 mM | |
2 | H2O | natural abundance | 90 % | |
3 | D2O | natural abundance | 10 % |
Bruker AMX - 400 MHz
State anisotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.00
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | DNA (26-MER) | natural abundance | 0.2 ~ 2.0 mM | |
2 | H2O | natural abundance | 90 % | |
3 | D2O | natural abundance | 10 % |
Bruker AMX - 400 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.00
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | DNA (26-MER) | natural abundance | 0.2 ~ 2.0 mM | |
2 | H2O | natural abundance | 90 % | |
3 | D2O | natural abundance | 10 % |
Bruker AMX - 400 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.00
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | DNA (26-MER) | natural abundance | 0.2 ~ 2.0 mM | |
2 | H2O | natural abundance | 90 % | |
3 | D2O | natural abundance | 10 % |
Properties
Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints, RDC restraints | combined_18279_2lpw.nef |
Input source #2: Coordindates | 2lpw.cif |
Diamagnetism of the molecular assembly | True (excluding Oxygen atoms) |
Whether the assembly has a disulfide bond | None |
Whether the assembly has a other bond | None |
Whether the assembly contains a cyclic polymer | None |
Overall data processing status | Warning |
Disulfide bonds
NoneOther bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)
NoneNon-standard residues
NoneSequence alignments
--------10--------20------ AAGGGTGGGTGTAAGTGTGGGTGGGT |||||||||||||||||||||||||| AAGGGTGGGTGTAAGTGTGGGTGGGT
Chain assignments
Entity_assembly_ID (NMR) | Auth_asym_ID (model) | Length | Unmapped | Conflict | Sequence coverage (%) |
---|---|---|---|---|---|
A | A | 26 | 0 | 0 | 100.0 |
Content subtype: combined_18279_2lpw.nef
Assigned chemical shifts
Comp_index_ID | Comp_ID | Atom_ID | CS value (ppm) |
---|---|---|---|
1 | DA | C1' | 91.903 |
1 | DA | C2 | 158.438 |
1 | DA | C8 | 142.366 |
2 | DA | C1' | 86.663 |
2 | DA | C2 | 158.36 |
2 | DA | C8 | 139.996 |
2 | DA | P | -0.389 |
3 | DG | C1' | 83.484 |
3 | DG | C8 | 136.935 |
3 | DG | P | 0.827 |
4 | DG | C1' | 91.068 |
4 | DG | C8 | 135.307 |
4 | DG | P | -0.669 |
5 | DG | C1' | 86.044 |
5 | DG | C8 | 136.469 |
5 | DG | P | -1.109 |
6 | DT | C1' | 92.218 |
6 | DT | C6 | 138.94 |
6 | DT | P | -2.069 |
7 | DG | C1' | 90.856 |
7 | DG | C8 | 136.049 |
7 | DG | P | 0.159 |
8 | DG | C1' | 82.519 |
8 | DG | C8 | 136.934 |
8 | DG | P | 0.037 |
9 | DG | C1' | 85.85 |
9 | DG | C8 | 136.241 |
9 | DG | P | -0.476 |
10 | DT | C1' | 91.306 |
10 | DT | C6 | 138.28 |
10 | DT | P | -0.538 |
11 | DG | C1' | 88.318 |
11 | DG | C8 | 139.249 |
11 | DG | P | -0.476 |
12 | DT | C1' | 88.762 |
12 | DT | C6 | 137.791 |
12 | DT | P | -0.538 |
13 | DA | C1' | 87.134 |
13 | DA | C2 | 159.328 |
13 | DA | C8 | 141.67 |
13 | DA | P | -0.669 |
14 | DA | C1' | 85.006 |
14 | DA | C2 | 158.95 |
14 | DA | C8 | 141.099 |
14 | DA | P | -0.771 |
15 | DG | C1' | 85.083 |
15 | DG | C8 | 137.721 |
15 | DG | P | -0.669 |
16 | DT | C1' | 89.699 |
16 | DT | C6 | 137.791 |
16 | DT | P | -0.592 |
17 | DG | C1' | 87.54 |
17 | DG | C8 | 138.84 |
17 | DG | P | -0.476 |
18 | DT | C1' | 88.704 |
18 | DT | C6 | 137.433 |
18 | DT | P | 0.259 |
19 | DG | C1' | 85.17 |
19 | DG | C8 | 137.292 |
19 | DG | P | 0.444 |
20 | DG | C1' | 84.833 |
20 | DG | C8 | 135.474 |
20 | DG | P | -0.616 |
21 | DG | C1' | 86.106 |
21 | DG | C8 | 136.532 |
21 | DG | P | -1.05 |
22 | DT | C1' | 92.218 |
22 | DT | C6 | 138.96 |
22 | DT | P | -2.069 |
23 | DG | C1' | 83.498 |
23 | DG | C8 | 135.75 |
23 | DG | P | 0.159 |
24 | DG | C1' | 82.166 |
24 | DG | C8 | 136.934 |
24 | DG | P | -0.024 |
25 | DG | C1' | 85.807 |
25 | DG | C8 | 135.178 |
25 | DG | P | -0.17 |
26 | DT | C1' | 89.312 |
26 | DT | C6 | 137.183 |
26 | DT | P | -0.538 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 241 | 219 | 90.9 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 182 | 170 | 93.4 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 59 | 49 | 83.1 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 7 | 7 | 100.0 |
13C chemical shifts | 7 | 0 | 0.0 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 23 | 23 | 100.0 |
Distance restraints
--------10--------20------ AAGGGTGGGTGTAAGTGTGGGTGGGT |||||||||||||||||||||||||| AAGGGTGGGTGTAAGTGTGGGTGGGT
--------10--------20------ AAGGGTGGGTGTAAGTGTGGGTGGGT |||| |||| |||| |||| .AGGG.GGGT.......TGGG.GGGT
--------10--------20------ AAGGGTGGGTGTAAGTGTGGGTGGGT |||| ||| |||| ||| .AGGG.GGG........TGGG.GGG --------10--------20-----
Dihedral angle restraints
--------10--------20------ AAGGGTGGGTGTAAGTGTGGGTGGGT ||||| ||| ||||| ||| AAGGG.GGG.......GTGGG.GGG --------10--------20-----
RDC restraints
--------10--------20------ AAGGGTGGGTGTAAGTGTGGGTGGGT |||||||||||||||||||||||||| AAGGGTGGGTGTAAGTGTGGGTGGGT