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Overexpression, purification and structural characterization of S114A mutant of UVI31+ from chlamydomonas reinhardtii
Authors
Singh, H., Chary, K.V.
Assembly
S114A mutant of UVI31+
Entity
1. S114A mutant of UVI31+ (polymer, Thiol state: not present), 123 monomers, 13284.76 Da Detail

MRGSHHHHHH GSHVISSIAS RGSMAEHQLG PIAGAIKSKV EAALSPTHFK LINDSHKHAG HYARDGSTAS DAGETHFRLE VTSDAFKGLT LVKRHQLIYG LLSDEFKAGL HALAMTTKTP AEQ


Formula weight
13284.76 Da
Source organism
Chlamydomonas reinhardtii
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 90.2 %, Completeness: 43.8 %, Completeness (bb): 74.6 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All43.8 % (595 of 1358)22.1 % (154 of 696)61.9 % (333 of 538)87.1 % (108 of 124)
Backbone74.6 % (546 of 732)46.9 % (119 of 254)89.1 % (319 of 358)90.0 % (108 of 120)
Sidechain20.2 % (149 of 738) 7.9 % (35 of 442)39.0 % (114 of 292) 0.0 % (0 of 4)
Aromatic 0.0 % (0 of 116) 0.0 % (0 of 58) 0.0 % (0 of 58)
Methyl22.3 % (29 of 130)12.3 % (8 of 65)32.3 % (21 of 65)

1. S114A mutant of UVI31+

MRGSHHHHHH GSHVISSIAS RGSMAEHQLG PIAGAIKSKV EAALSPTHFK LINDSHKHAG HYARDGSTAS DAGETHFRLE VTSDAFKGLT LVKRHQLIYG LLSDEFKAGL HALAMTTKTP AEQ

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.4, Details Uniformly 15N-labelled (u-15N UVI31+) and uniformly 13C/15N doubly-labelled (u-13C/15N UVI31+) samples were produced in minimal (M9) media. E. coli strain BL21 (DE3) harboring the vector pET was grown in the appropriate minimal (M9) medium containing ampicillin (100 mg/ml) to an absorbance A600 of 0.5 at 33 C. The cells were harvested and resuspended in fresh minimal (M9) medium without ampicillin, followed by induction with 1 mM IPTG at 25 C for overnight. Cells were collected by centrifugation, resuspended in lysis buffer [50 mM sodium phosphate (pH 7.6), 50 mM NaCl, 1 mM PMSF, 5 mM Imidazole, 2% Tween 20, and 1 mg/ml lysozyme] and incubated on ice for 30 min. Cells were disrupted by ultrasonication. The cell debris was removed by centrifugation (15,000 rpm for 20 min at 4 C). The UVI31+ protein was purified from the resulting supernatant using Ni NTA (Ni2+-nitrilotriacetate) agarose (Qiagen, Hilden, Germany). His6-tagged UVI31+ was eluted with 250 mM imidazole in 50 mM sodium phosphate (pH 7.6), 50 mM NaCl. The eluted fractions were dialyzed overnight against 50 mM sodium phosphate (pH 6.4), 50 mM NaCl at 4 C. The protein was further purified by gel filtration using a Sephadex G75 column (GE healthcare, USA) equilibrated with 50 mM sodium phosphate (pH 6.4), 50 mM NaCl. The recombinant protein eluted at a volume corresponding to a monomer of approximately 13 kDa. N-terminal amino acid sequence analysis was performed by the Proteomics International Pty Ltd, Australia. The UVI31+ was quantitated by Bradfords with bovine serum albumin as a standard, and by measuring absorbance at 280 nm (Bradford 1976). Typical yields were 25 30 mg/l of culture.


#NameIsotope labelingTypeConcentration
1S114A mutant of UVI31+[U-100% 13C; U-100% 15N]0.8 (±0.03) mM
2H2Onatural abundance90 %
3D2O[U-2H]10 %

LACS Plot; CA
Referencing offset: 0.45 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: 0.45 ppm, Outliers: 2 Detail
LACS Plot; CO
Referencing offset: 0.37 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 22 models in PDB: 2N8Q, Strand ID: A Detail


Release date
2013-02-27
Citation
¹H, ¹³C and ¹⁵N resonance assignments of S114A mutant of UVI31+ from Chlamydomonas reinhardtii
Singh, H., Raghavan, V., Shukla, M., Rao, B.J., Chary, K.V.R.
Biomol. NMR Assign. (2014), 8, 71-74, PubMed 23266947 , DOI 10.1007/s12104-012-9455-1 ,
Related entities 1. S114A mutant of UVI31+, : 1 : 1 : 15 entities Detail
Experiments performed 5 experiments Detail
NMR combined restraints 4 contents Detail
Keywords S114A mutant of UVI31+