BMRB: 18979

DNA containing a cluster of 8-oxo-guanine and abasic site lesion : beta anomer

Authors

Zalesak, J., Jourdan, M., Constant, J., Lourdin, M.

Assembly

DNA containing a cluster of 8-oxo-guanine and abasic site lesion : beta anomer

Entity

1. DNA A chain (polymer, Thiol state: not present), 11 monomers, 3225.011 Da Detail

CGCTCXCACG C

2. DNA B chain (polymer, Thiol state: not present), 11 monomers, 3534.218 Da Detail

GCGTGGGAXC G

Total weight

6759.229 Da

Max. entity weight

3534.218 Da

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 90.9 %, Completeness: 83.0 %, Completeness (bb): 76.9 % Detail

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Polymer type: polydeoxyribonucleotide

	Total	1H	31P
All	83.0 % (181 of 218)	82.3 % (163 of 198)	90.0 % (18 of 20)
Suger, PO4	76.9 % (123 of 160)	75.0 % (105 of 140)	90.0 % (18 of 20)
Nucleobase	100.0 % (58 of 58)	100.0 % (58 of 58)
Aromatic	100.0 % (40 of 40)	100.0 % (40 of 40)
Methyl	100.0 % (2 of 2)	100.0 % (2 of 2)

1. DNA A chain

CGCTCXCACG C

2. DNA B chain

GCGTGGGAXC G

Show sample condition

Sample

Solvent system 100% D2O, Pressure 1 atm, Temperature 283 K, pH 6

#	Name	Isotope labeling	Type	Concentration
1	DNA_A_chain	natural abundance		0.55 mM
2	DNA_B_chain	natural abundance		0.55 mM
3	D2O	natural abundance		100 %

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Release date

2014-01-05

Citation

Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions
Zaleak, J., Lourdin, M., Krej, L., Constant, J., Jourdan, M.
J. Mol. Biol. (2014), 426, 1524-1538, PubMed 24384094 , DOI 10.1016/j.jmb.2013.12.022 , Abstract

Experiments performed 3 experiments Detail