BMRBj - BMREntryMaster

Found 1 Document (0.62 seconds)

BMRB: 19828

2MLO

HUMAN CCR2 MEMBRANE-PROXIMAL C-TERMINAL REGION (PRO-C) IN A MEMBRANE BOUND FORM

Authors

Esaki, K.

Assembly

CHEMOKINE (C-C MOTIF) RECEPTOR 2

Entity

1. CHEMOKINE (C-C MOTIF) RECEPTOR 2 (polymer, Thiol state: not present), 16 monomers, 2127.491 Da Detail

EKFRRYLSVF FRKHIT

Formula weight

2127.491 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 86.0 %, Completeness (bb): 78.1 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	86.0 % (196 of 228)	90.9 % (110 of 121)	79.1 % (72 of 91)	87.5 % (14 of 16)
Backbone	78.1 % (75 of 96)	90.6 % (29 of 32)	66.7 % (32 of 48)	87.5 % (14 of 16)
Sidechain	92.6 % (137 of 148)	91.0 % (81 of 89)	94.9 % (56 of 59)
Aromatic	95.2 % (40 of 42)	95.2 % (20 of 21)	95.2 % (20 of 21)
Methyl	100.0 % (14 of 14)	100.0 % (7 of 7)	100.0 % (7 of 7)

1. CHEMOKINE (C-C MOTIF) RECEPTOR 2

EKFRRYLSVF FRKHIT

Show sample condition

Sample #1

Solvent system 100% D2O, Pressure 1 atm, Temperature 293 K, pH 6.5

#	Name	Isotope labeling	Concentration
1	CCR2_Pro-C	[U-100% 13C; U-100% 15N]	200 uM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	DPC	[U-99% 2H]	10 mM
5	D2O	[U-100% 2H]	100 %

Sample #2

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 6.5

#	Name	Isotope labeling	Concentration
6	CCR2_Pro-C	[U-100% 13C; U-100% 15N]	200 uM
7	sodium phosphate	natural abundance	20 mM
8	sodium chloride	natural abundance	50 mM
9	DPC	[U-99% 2H]	10 mM
10	D2O	[U-100% 2H]	5 %
11	H2O	natural abundance	95 %

Sample #3

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 6.5

#	Name	Isotope labeling	Concentration
12	CCR2_Pro-C	[U-100% 15N]	200 uM
13	sodium phosphate	natural abundance	20 mM
14	sodium chloride	natural abundance	50 mM
15	DPC	[U-99% 2H]	10 mM
16	D2O	[U-100% 2H]	5 %
17	H2O	natural abundance	95 %

Protein Blocks Logo

Calculated from 20 models in PDB: 2MLO, Strand ID: A Detail

Release date

2014-10-05

Related entities 1. CHEMOKINE (C-C MOTIF) RECEPTOR 2, : 1 : 2 : 1 : 2 : 50 entities Detail

Interaction partners 1. CHEMOKINE (C-C MOTIF) RECEPTOR 2, : 4 interactors Detail

More details for 4 interactors identified by 2 citations

Experiments performed 9 experiments Detail

1 3D 1H-15N NOESY

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 6.5

#	Name	Isotope labeling	Concentration
12	CCR2_Pro-C	[U-100% 15N]	200 uM
13	sodium phosphate	natural abundance	20 mM
14	sodium chloride	natural abundance	50 mM
15	DPC	[U-99% 2H]	10 mM
16	D2O	[U-100% 2H]	5 %
17	H2O	natural abundance	95 %

2 3D HNHA

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 6.5

#	Name	Isotope labeling	Concentration
12	CCR2_Pro-C	[U-100% 15N]	200 uM
13	sodium phosphate	natural abundance	20 mM
14	sodium chloride	natural abundance	50 mM
15	DPC	[U-99% 2H]	10 mM
16	D2O	[U-100% 2H]	5 %
17	H2O	natural abundance	95 %

3 3D 1H- 13C NOESY

Instrument

Bruker Avance - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 293 K, pH 6.5

#	Name	Isotope labeling	Concentration
1	CCR2_Pro-C	[U-100% 13C; U-100% 15N]	200 uM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	DPC	[U-99% 2H]	10 mM
5	D2O	[U-100% 2H]	100 %

4 3D CBCA(CO)NH

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 6.5

#	Name	Isotope labeling	Concentration
6	CCR2_Pro-C	[U-100% 13C; U-100% 15N]	200 uM
7	sodium phosphate	natural abundance	20 mM
8	sodium chloride	natural abundance	50 mM
9	DPC	[U-99% 2H]	10 mM
10	D2O	[U-100% 2H]	5 %
11	H2O	natural abundance	95 %

5 3D HNCACB

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 6.5

#	Name	Isotope labeling	Concentration
6	CCR2_Pro-C	[U-100% 13C; U-100% 15N]	200 uM
7	sodium phosphate	natural abundance	20 mM
8	sodium chloride	natural abundance	50 mM
9	DPC	[U-99% 2H]	10 mM
10	D2O	[U-100% 2H]	5 %
11	H2O	natural abundance	95 %

6 3D HBHA(CO)NH

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 6.5

#	Name	Isotope labeling	Concentration
6	CCR2_Pro-C	[U-100% 13C; U-100% 15N]	200 uM
7	sodium phosphate	natural abundance	20 mM
8	sodium chloride	natural abundance	50 mM
9	DPC	[U-99% 2H]	10 mM
10	D2O	[U-100% 2H]	5 %
11	H2O	natural abundance	95 %

7 3D HCCH- TOCSY

Instrument

Bruker Avance - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 293 K, pH 6.5

#	Name	Isotope labeling	Concentration
1	CCR2_Pro-C	[U-100% 13C; U-100% 15N]	200 uM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	DPC	[U-99% 2H]	10 mM
5	D2O	[U-100% 2H]	100 %

8 2D 1H-15N HSQC

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 6.5

#	Name	Isotope labeling	Concentration
12	CCR2_Pro-C	[U-100% 15N]	200 uM
13	sodium phosphate	natural abundance	20 mM
14	sodium chloride	natural abundance	50 mM
15	DPC	[U-99% 2H]	10 mM
16	D2O	[U-100% 2H]	5 %
17	H2O	natural abundance	95 %

9 2D 1H-13C HSQC

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 293 K, pH 6.5

#	Name	Isotope labeling	Concentration
1	CCR2_Pro-C	[U-100% 13C; U-100% 15N]	200 uM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	DPC	[U-99% 2H]	10 mM
5	D2O	[U-100% 2H]	100 %

NMR combined restraints 4 contents Detail

Properties

Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints	combined_19828_2mlo.nef
Input source #2: Coordindates	2mlo.cif
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Sequence alignments

Entity_assembly_ID (NMR): A vs Auth_asym_ID (model): A

--------10------
EKFRRYLSVFFRKHIT
||||||||||||||||
EKFRRYLSVFFRKHIT

Chain assignments

Entity_assembly_ID (NMR)	Auth_asym_ID (model)	Length	Unmapped	Conflict	Sequence coverage (%)
A	A	16	0	0	100.0

Content subtype: combined_19828_2mlo.nef

#	Content subtype	Saveframe	Status	# of rows (sets)	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chem_shift_list_1	Warning	195		100.0 (chain: A, length: 16)
1	Distance restraints	DYANA/DIANA_distance_constraints_3	OK	262 (1)	noe	100.0 (chain: A, length: 16)
1	Dihedral angle restraints	DYANA/DIANA_dihedral_2	OK	22 (22)	.	81.2 (chain: A, length: 16)

Assigned chemical shifts

Saveframe: assigned_chem_shift_list_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 16, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 110
  - ¹³C chemical shifts: 71
  - ¹⁵N chemical shifts: 14
- Completeness of assignments
  - Entity_assemble_ID: A
- Tautomeric state of HIS
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: A

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	121	110	90.9
¹³C chemical shifts	91	71	78.0
¹⁵N chemical shifts	19	14	73.7

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	32	29	90.6
¹³C chemical shifts	32	15	46.9
¹⁵N chemical shifts	16	14	87.5

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	89	81	91.0
¹³C chemical shifts	59	56	94.9
¹⁵N chemical shifts	3	0	0.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	7	7	100.0
¹³C chemical shifts	7	7	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	21	20	95.2
¹³C chemical shifts	21	20	95.2

Distance restraints

Saveframe: DYANA/DIANA_distance_constraints_3
- Status: OK
- Experiment type: noe
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 16, Sequence coverage: 100.0%
- Total number of restraints: 262
- Weight of restraints: 1.0 (262)
- Potential type of restraints: upper-bound-parabolic (262)
- Range of distance target values: 2.83, 5.5 (Å)
- Histogram of distance target values
- Histogram of discrepancy in distance target values
- Distance restraints per residue
  - Chain_ID: A
- Distance restraints on contact map

Dihedral angle restraints

Saveframe: DYANA/DIANA_dihedral_2
- Status: OK
- Experiment type: .
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 16, Sequence coverage: 81.2%
- Total number of restraints: 22
- Total number of restraints per polymer type: 22
- Weight of restraints: 1.0 (22)
- Potential type of restraints: square-well-parabolic (22)
- Plot of Phi-Psi angle restraints
- Dihedral angle restraints per residue
  - Chain_ID: A

Keywords CCR2, PRO-C, SIGNALING PROTEIN

Search

Query history

Resources

Search for primary databases

Search for subsidiary databases

Display

Hits per page

Statistics

Query Changes will take effect after "OK" button is selected.

Maximum hits

Default conjunction operator

Omni-box

Search filter

Sequence search (BLAST)

E-value

Query sequence coverage

Miscellaneous

The number of previewed publications

Completeness of assigned chemical shift

Sequence chart about top aligned regions

Sequence chart about interacting regions

Hit context with highlight

Link destinations for BMRB, PDB and EMDB

Found 1 Document (0.62 seconds)

BMRB: 19828

Sample #1

Sample #2

Sample #3

Related entities 1. CHEMOKINE (C-C MOTIF) RECEPTOR 2, : 1 : 2 : 1 : 2 : 50 entities Detail

Interaction partners 1. CHEMOKINE (C-C MOTIF) RECEPTOR 2, : 4 interactors Detail

Experiments performed 9 experiments Detail

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

NMR combined restraints 4 contents Detail