BMRBj - BMREntryMaster

Found 1 Document (0.675 seconds)

BMRB: 25368

2MZW

Backbone 1H, 13C and 15N chemical shifts for Staphylococcus aureus EF-GC3, a truncated form of elongation factor G comprising domains III-V.

Authors

Tomlinson, J.H., O'Neill, A., Homans, S.W., Zhuravleva, A., Kalverda, A.P., Thompson, G.S.

Assembly

EF-GC3 monomer

Entity

1. EF-GC3 monomer (polymer, Thiol state: all free), 301 monomers, 33428.37 Da Detail

MEFPEPVIHL SVEPKSKADQ DKMTQALVKL QEEDPTFHAH TDEETGQVII GGMGELHLDI LVDRMKKEFN VECNVGAPMV SYRETFKSSA QVQGKFSRQS GGRGQYGDVH IEFTPNETGA GFEFENAIVG GVVPREYIPS VEAGLKDAME NGVLAGYPLI DVKAKLYDGS YHDVDSSEMA FKIAASLALK EAAKKCDPVI LEPMMKVTIE MPEEYMGDIM GDVTSRRGRV DGMEPRGNAQ VVNAYVPLSE MFGYATSLRS NTQGRGTYTM YFDHYAEVPK SIAEDIIKKN KGELEHHHHH H

Formula weight

33428.37 Da

Source organism

Staphylococcus aureus

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 86.7 %, Completeness: 39.9 %, Completeness (bb): 71.7 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	39.9 % (1371 of 3433)	20.1 % (359 of 1785)	57.4 % (771 of 1343)	79.0 % (241 of 305)
Backbone	71.7 % (1273 of 1776)	45.9 % (282 of 614)	85.7 % (751 of 876)	83.9 % (240 of 286)
Sidechain	17.1 % (331 of 1931)	6.7 % (79 of 1171)	33.9 % (251 of 741)	5.3 % (1 of 19)
Aromatic	6.2 % (16 of 258)	9.3 % (12 of 129)	3.1 % (4 of 129)
Methyl	16.0 % (47 of 294)	10.9 % (16 of 147)	21.1 % (31 of 147)

1. EF-GC3

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1.000 atm, Temperature 273 K, pH 8.000 (±0.01), Details 300 uM 15N 13C partially 2H (expressed in D2O with 1H glucose) EF-GC3 in 20 mM TrisHCl, 300 mM NaCl, 1 mM DTT, pH 8.0

#	Name	Isotope labeling	Concentration
1	EF-GC3	[U-100% 13C; U-100% 15N; U-80% 2H]	0.3 mM
2	TrisHCl	natural abundance	20 mM
3	NaCl	natural abundance	300 mM
4	DTT	natural abundance	1 mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: 0.53 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: 0.53 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: 0.21 ppm, Outliers: 2 Detail

Release date

2014-11-25

Citation

A target-protection mechanism of antibiotic resistance at atomic resolution: insights into FusB-type fusidic acid resistance
Tomlinson, J.H., Thompson, G.S., Kalverda, A.P., Zhuravleva, A., O'Neill, A.J.
Sci. Rep. (2016), 6, 19524-19524, PubMed 26781961 , DOI 10.1038/srep19524 , Abstract

Entries sharing articles BMRB: 1 entries Detail

BMRB: 25504 released on 2016-01-24
Title Staphylococcus aureus FusB:EF-GC3 complex.

Related entities 1. EF-GC3 monomer, : 1 : 6 : 280 entities Detail

Experiments performed 7 experiments Detail

1 3D HN(CO)CA

Instrument

Varian Inova - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1.000 atm, Temperature 273 K, pH 8.000 (±0.01), Details 300 uM 15N 13C partially 2H (expressed in D2O with 1H glucose) EF-GC3 in 20 mM TrisHCl, 300 mM NaCl, 1 mM DTT, pH 8.0

#	Name	Isotope labeling	Concentration
1	EF-GC3	[U-100% 13C; U-100% 15N; U-80% 2H]	0.3 mM
2	TrisHCl	natural abundance	20 mM
3	NaCl	natural abundance	300 mM
4	DTT	natural abundance	1 mM

2 3D HNCO

Instrument

Varian Inova - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	EF-GC3	[U-100% 13C; U-100% 15N; U-80% 2H]	0.3 mM
2	TrisHCl	natural abundance	20 mM
3	NaCl	natural abundance	300 mM
4	DTT	natural abundance	1 mM

3 2D 1H-15N HSQC/HMQC

Instrument

Varian Inova - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	EF-GC3	[U-100% 13C; U-100% 15N; U-80% 2H]	0.3 mM
2	TrisHCl	natural abundance	20 mM
3	NaCl	natural abundance	300 mM
4	DTT	natural abundance	1 mM

4 HNCACO (H[N[ca[CO]]])

Instrument

Varian Inova - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	EF-GC3	[U-100% 13C; U-100% 15N; U-80% 2H]	0.3 mM
2	TrisHCl	natural abundance	20 mM
3	NaCl	natural abundance	300 mM
4	DTT	natural abundance	1 mM

5 3D HNCA

Instrument

Varian Inova - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	EF-GC3	[U-100% 13C; U-100% 15N; U-80% 2H]	0.3 mM
2	TrisHCl	natural abundance	20 mM
3	NaCl	natural abundance	300 mM
4	DTT	natural abundance	1 mM

6 3D HNCACB

Instrument

Varian Inova - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	EF-GC3	[U-100% 13C; U-100% 15N; U-80% 2H]	0.3 mM
2	TrisHCl	natural abundance	20 mM
3	NaCl	natural abundance	300 mM
4	DTT	natural abundance	1 mM

7 HNCOCACB (H[N[co[{CA|ca[C]}]]])

Instrument

Varian Inova - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	EF-GC3	[U-100% 13C; U-100% 15N; U-80% 2H]	0.3 mM
2	TrisHCl	natural abundance	20 mM
3	NaCl	natural abundance	300 mM
4	DTT	natural abundance	1 mM

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr25368_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr25368_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chem_shift_list	Warning	1195		84.4 (chain: 1, length: 301)
1	Chemical shift references	chemical_shift_reference_1	OK	3		No information

Assigned chemical shifts

Saveframe: assigned_chem_shift_list
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 301, Sequence coverage: 84.4%
- Total number of assignments
  - ¹³C chemical shifts: 727
  - ¹H chemical shifts: 234
  - ¹⁵N chemical shifts: 234
- Completeness of assignments
  - Entity_assemble_ID: 1
- Redox state of CYS
- Peptide bond of PRO
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	1343	727	54.1
¹H chemical shifts	1785	234	13.1
¹⁵N chemical shifts	316	234	74.1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	602	504	83.7
¹H chemical shifts	614	234	38.1
¹⁵N chemical shifts	286	234	81.8

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	741	223	30.1
¹H chemical shifts	1171	0	0.0
¹⁵N chemical shifts	30	0	0.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	162	21	13.0
¹H chemical shifts	162	0	0.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	129	0	0.0
¹H chemical shifts	129	0	0.0

Keywords EF-G, FusB, allostery, antibiotic resistance, fusidic acid, structure

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Found 1 Document (0.675 seconds)

BMRB: 25368

Sample

Chemical shift reference

Chemical shift reference

Chemical shift reference

Entries sharing articles BMRB: 1 entries Detail

Related entities 1. EF-GC3 monomer, : 1 : 6 : 280 entities Detail

Experiments performed 7 experiments Detail

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Chemical shift validation 3 contents Detail