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BMRB: 25703

2N5B

Structure of the reduced and oxidized state of the mutant D24A of yeast thioredoxin 1: insight into the mechanism for the closing of the water cavity

Authors

Iqbal, A., Moraes, A.H., Valente, A., Almeida, F.C.L.

Assembly

oxidized form of thioredoxin 1 from Sacharomyces cerevisiae

Entity

1. oxidized form of thioredoxin 1 from Sacharomyces cerevisiae (polymer), 103 monomers, 11190.84 Da Detail

MVTQFKTASE FDSAIAQDKL VVVAFYATWC GPCKMIAPMI EKFSEQYPQA DFYKLDVDEL GDVAQKNEVS AMPTLLLFKN GKEVAKVVGA NPAAIKQAIA ANA

Formula weight

11190.84 Da

Source organism

SACCHAROMYCES CEREVISIAE

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 89.2 %, Completeness (bb): 96.2 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	89.2 % (1062 of 1191)	87.4 % (536 of 613)	90.2 % (423 of 469)	94.5 % (103 of 109)
Backbone	96.2 % (585 of 608)	97.6 % (200 of 205)	95.7 % (292 of 305)	94.9 % (93 of 98)
Sidechain	84.3 % (575 of 682)	82.4 % (336 of 408)	87.1 % (229 of 263)	90.9 % (10 of 11)
Aromatic	85.4 % (82 of 96)	85.4 % (41 of 48)	85.1 % (40 of 47)	100.0 % (1 of 1)
Methyl	95.2 % (120 of 126)	98.4 % (62 of 63)	92.1 % (58 of 63)

1. Yeast Thioredoxin 1 Oxidized

MVTQFKTASE FDSAIAQDKL VVVAFYATWC GPCKMIAPMI EKFSEQYPQA DFYKLDVDEL GDVAQKNEVS AMPTLLLFKN GKEVAKVVGA NPAAIKQAIA ANA

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details NMR

#	Name	Isotope labeling	Concentration
1	yTrx1D24A	[U-100% 13C; U-100% 15N]	850 uM
2	H2O	natural abundance	90 %
3	D2O	natural abundance	10 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.52 ppm, Outliers: 3 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.52 ppm, Outliers: 3 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.02 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 1.02 ppm, Outliers: 2 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2N5B, Strand ID: A Detail

Release date

2015-10-25

Citation

Structures of the reduced and oxidized state of the mutant D24A of yeast thioredoxin 1: insights into the mechanism for the closing of the water cavity
Iqbal, A., Moraes, A.H., Valente, A., Almeida, F.C.L.
J. Biomol. NMR (2015), 63, 417-423, PubMed 26482062 , DOI 10.1007/s10858-015-9996-6 , Abstract

Entries sharing articles BMRB: 1 entries Detail

BMRB: 25702 released on 2015-10-25
Title Structures of the reduced and oxidized state of the mutant D24A of yeast thioredoxin 1: insight into the mechanism for the closing of the water cavity

Related entities 1. oxidized form of thioredoxin 1 from Sacharomyces cerevisiae, : 1 : 1 : 5 : 265 entities Detail

Interaction partners 1. oxidized form of thioredoxin 1 from Sacharomyces cerevisiae, : 15 interactors Detail

More details for 15 interactors identified by 5 citations

Experiments performed 12 experiments Detail

1 2D 1H-15N HSQC