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CYSTEIN KNOT WITH 2FP INTEGRIN AVB6 CANCER RECOGNITION SITE
Authors
Filipp, F.V., Tikole, S.
Assembly
CYSTEIN KNOT WITH 2FP INTEGRIN AVB6 CANCER RECOGNITION SITE
Entity
1. CYSTEIN KNOT WITH 2FP INTEGRIN AVB6 CANCER RECOGNITION SITE (polymer, Thiol state: all disulfide bound), 37 monomers, 3911.456 Da Detail

XGCILNGRTD LGTLLFRCRR DSDCPGACIC RGNGYCG


Formula weight
3911.456 Da
Entity Connection
disulfide 3 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1disulfidesing1:CYS3:SG1:CYS28:SG
2disulfidesing1:CYS18:SG1:CYS30:SG
3disulfidesing1:CYS24:SG1:CYS28:SG

Exptl. method
solution NMR
Refine. method
simulated annealing, torsion angle dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 94.6 %, Completeness: 34.9 %, Completeness (bb): 79.5 % Detail

Polymer type: polypeptide(L)

Total1H
All34.9 % (68 of 195)34.9 % (68 of 195)
Backbone79.5 % (62 of 78)79.5 % (62 of 78)
Sidechain 5.1 % (6 of 117) 5.1 % (6 of 117)
Aromatic 0.0 % (0 of 9) 0.0 % (0 of 9)
Methyl 6.7 % (1 of 15) 6.7 % (1 of 15)

1. entity

XGCILNGRTD LGTLLFRCRR DSDCPGACIC RGNGYCG

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 (±0.2) K, pH 6.0 (±0.1), Details 20mM KP pH6.0


#NameIsotope labelingTypeConcentration
1KNOT_2FPnatural abundance2 mM
2potassium phosphatenatural abundance20 mM
Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 300 (±0.2) K, pH 6.0 (±0.1), Details 20mM KP pH6.0


#NameIsotope labelingTypeConcentration
3KNOT_2FPnatural abundance2 mM
4potassium phosphatenatural abundance20 mM
5D2O[U-2H]5.5 M

Protein Blocks Logo
Calculated from 20 models in PDB: 2N8C, Strand ID: A Detail


Release date
2016-10-26
Citation
Cystein knot with 2-FP label and integrin AvB6 cancer recognition site
Filipp, F.V., Tikole, S.
Not known
Related entities 1. CYSTEIN KNOT WITH 2FP INTEGRIN AVB6 CANCER RECOGNITION SITE, : 1 : 2 : 5 entities Detail
Experiments performed 4 experiments Detail
NMR combined restraints 3 contents Detail
Keywords cancer, cystein knot, imaging, knot, knottin