Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 4th position
Polymer type: polydeoxyribonucleotide
Total | 1H | |
---|---|---|
All | 61.8 % (47 of 76) | 61.8 % (47 of 76) |
Suger, PO4 | 60.7 % (34 of 56) | 60.7 % (34 of 56) |
Nucleobase | 65.0 % (13 of 20) | 65.0 % (13 of 20) |
Aromatic | 68.8 % (11 of 16) | 68.8 % (11 of 16) |
Methyl | 100.0 % (2 of 2) | 100.0 % (2 of 2) |
1. entity 1
XGXXAATTXG CGSolvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.8, Details 50 mM sodium chloride, 10 mM potassium phosphate, 0.1 mM EDTA, 1 mM DNA (5'-D(*(DC5)P*GP*(DMC)P*(8OG)P*AP*AP*TP*TP*(DMC)P*GP*CP*(DG3))-3'), 100% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | DNA (5'-D(*(DC5)P*GP*(DMC)P*(8OG)P*AP*AP*TP*TP*(DMC)P*GP*CP*(DG3))-3') | natural abundance | 1 mM | |
2 | EDTA | natural abundance | 0.1 mM | |
3 | potassium phosphate | natural abundance | 10 mM | |
4 | sodium chloride | natural abundance | 50 mM |
Polymer type: polydeoxyribonucleotide
Total | 1H | |
---|---|---|
All | 36.2 % (55 of 152) | 36.2 % (55 of 152) |
Suger, PO4 | 30.4 % (34 of 112) | 30.4 % (34 of 112) |
Nucleobase | 52.5 % (21 of 40) | 52.5 % (21 of 40) |
Aromatic | 53.1 % (17 of 32) | 53.1 % (17 of 32) |
Methyl | 50.0 % (2 of 4) | 50.0 % (2 of 4) |
1. entity 1
XGXXAATTXG CGSolvent system 100% D2O, Pressure 1 atm, Temperature 279 K, pH 6.8, Details 50 mM sodium chloride, 10 mM potassium phosphate, 0.1 mM EDTA, 1 mM DNA (5'-D(*(DC5)P*GP*(DMC)P*(8OG)P*AP*AP*TP*TP*(DMC)P*GP*CP*(DG3))-3'), 100% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | DNA (5'-D(*(DC5)P*GP*(DMC)P*(8OG)P*AP*AP*TP*TP*(DMC)P*GP*CP*(DG3))-3') | natural abundance | 1 mM | |
2 | EDTA | natural abundance | 0.1 mM | |
3 | potassium phosphate | natural abundance | 10 mM | |
4 | sodium chloride | natural abundance | 50 mM |