BMRBj - BMREntryMaster

Found 1 Document (0.645 seconds)

BMRB: 30661

6U6P

Solution NMR Structure Of The Full Length Latent Form MinE Protein From Neisseria gonorrheae

Authors

Cai, M., Shen, Y., Clore, M.

Assembly

Cell division topological specificity factor

Entity

1. Cell division topological specificity factor (polymer, Thiol state: not present), 81 monomers, 9247.647 × 2 Da Detail

MSLIELLFGQ MQKTATVARD RLQIIIAQER AQEGQTPDYL PTLRKALMEV LSKYVNVSLD NIRISQEKQD GMDVLELNIT L

Total weight

18495.295 Da

Max. entity weight

9247.647 Da

Source organism

Neisseria gonorrhoeae

Exptl. method

solution NMR

Refine. method

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 54.0 %, Completeness (bb): 95.6 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	54.0 % (524 of 971)	39.2 % (199 of 508)	65.7 % (245 of 373)	88.9 % (80 of 90)
Backbone	95.6 % (461 of 482)	92.0 % (150 of 163)	97.1 % (233 of 240)	98.7 % (78 of 79)
Sidechain	24.3 % (138 of 567)	13.6 % (47 of 345)	42.2 % (89 of 211)	18.2 % (2 of 11)
Aromatic	0.0 % (0 of 26)	0.0 % (0 of 13)	0.0 % (0 of 13)
Methyl	15.5 % (18 of 116)	12.1 % (7 of 58)	19.0 % (11 of 58)

1. entity 1

MSLIELLFGQ MQKTATVARD RLQIIIAQER AQEGQTPDYL PTLRKALMEV LSKYVNVSLD NIRISQEKQD GMDVLELNIT L

Show sample condition

Sample #1

Solvent system 95% H2O/5% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-13C/15N MinE-wt, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	MinE-wt	[U-13C; U-15N]	1.0 mM
2	potassium phosphate	natural abundance	25 mM
3	EDTA	natural abundance	0.5 mM
4	benzamidine chloride	natural abundance	0.1 mM

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-2H/15N MinE-wt-RDC, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
5	MinE-wt-RDC	[U-2H; U-15N]		1.0 mM

Sample #3

Solvent system 95% H2O/5% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-13C/15N MinE-d10, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
6	MinE-d10	[U-13C; U-15N]	1.0 mM
7	potassium phosphate	natural abundance	25 mM
8	EDTA	natural abundance	0.5 mM
9	benzamidine chloride	natural abundance	0.1 mM

Sample #4

Solvent system 90% H2O/10% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-2H/15N MinE-d10-RDC, 1.0 mM U-2H/15N MinE-d10-CPMG, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
10	MinE-d10-RDC	[U-2H; U-15N]		1.0 mM
11	MinE-d10-CPMG	[U-2H; U-15N]		1.0 mM

Protein Blocks Logo

Calculated from 10 models in PDB: 6U6P, Strand ID: A, B Detail

Release date

2019-11-17

Citation

Probing transient excited states of the bacterial cell division regulator MinE by relaxation dispersion NMR spectroscopy
Cai, M., Huang, Y., Shen, Y., Li, M., Mizuuchi, M., Ghirlando, R., Mizuuchi, K., Clore, G.M.
Proc. Natl. Acad. Sci. U. S. A. (2019), 116, 25446-25455, PubMed 31772021 , DOI 10.1073/pnas.1915948116 , Abstract

Related entities 1. Cell division topological specificity factor, : 1 : 2 : 103 entities Detail

Interaction partners 1. Cell division topological specificity factor, : 1 interactors Detail

More details for 1 interactors identified by 1 citations

Experiments performed 12 experiments Detail

1 3D CBCA(CO)NH

Instrument

Bruker AVANCE - 800 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-13C/15N MinE-wt, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	MinE-wt	[U-13C; U-15N]	1.0 mM
2	potassium phosphate	natural abundance	25 mM
3	EDTA	natural abundance	0.5 mM
4	benzamidine chloride	natural abundance	0.1 mM

2 3D HNCACB

Instrument

Bruker AVANCE - 800 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-13C/15N MinE-wt, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	MinE-wt	[U-13C; U-15N]	1.0 mM
2	potassium phosphate	natural abundance	25 mM
3	EDTA	natural abundance	0.5 mM
4	benzamidine chloride	natural abundance	0.1 mM

3 3D HNCO

Instrument

Bruker AVANCE - 800 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-13C/15N MinE-wt, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	MinE-wt	[U-13C; U-15N]	1.0 mM
2	potassium phosphate	natural abundance	25 mM
3	EDTA	natural abundance	0.5 mM
4	benzamidine chloride	natural abundance	0.1 mM

4 3D HBHA(CBCACO)NH

Instrument

Bruker AVANCE - 800 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-13C/15N MinE-wt, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	MinE-wt	[U-13C; U-15N]	1.0 mM
2	potassium phosphate	natural abundance	25 mM
3	EDTA	natural abundance	0.5 mM
4	benzamidine chloride	natural abundance	0.1 mM

5 3D CBCA(CO)NH

Instrument

Bruker AVANCE - 800 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-13C/15N MinE-d10, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
6	MinE-d10	[U-13C; U-15N]	1.0 mM
7	potassium phosphate	natural abundance	25 mM
8	EDTA	natural abundance	0.5 mM
9	benzamidine chloride	natural abundance	0.1 mM

6 3D HBHA(CBCACO)NH

Instrument

Bruker AVANCE - 800 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-13C/15N MinE-d10, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
6	MinE-d10	[U-13C; U-15N]	1.0 mM
7	potassium phosphate	natural abundance	25 mM
8	EDTA	natural abundance	0.5 mM
9	benzamidine chloride	natural abundance	0.1 mM

7 3D HNCO

Instrument

Bruker AVANCE - 800 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-13C/15N MinE-d10, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
6	MinE-d10	[U-13C; U-15N]	1.0 mM
7	potassium phosphate	natural abundance	25 mM
8	EDTA	natural abundance	0.5 mM
9	benzamidine chloride	natural abundance	0.1 mM

8 3D HNCACB

Instrument

Bruker AVANCE - 800 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-13C/15N MinE-d10, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
6	MinE-d10	[U-13C; U-15N]	1.0 mM
7	potassium phosphate	natural abundance	25 mM
8	EDTA	natural abundance	0.5 mM
9	benzamidine chloride	natural abundance	0.1 mM

9 HSQC IPAP

Instrument

Bruker AVANCE - 600 MHz

Sample

State anisotropic, Solvent system 90% H2O/10% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-2H/15N MinE-wt-RDC, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
5	MinE-wt-RDC	[U-2H; U-15N]		1.0 mM

10 HSQC IPAP

Instrument

Bruker AVANCE - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-2H/15N MinE-wt-RDC, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
5	MinE-wt-RDC	[U-2H; U-15N]		1.0 mM

11 HSQC IPAP

Instrument

Bruker AVANCE - 600 MHz

Sample

State anisotropic, Solvent system 90% H2O/10% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-2H/15N MinE-d10-RDC, 1.0 mM U-2H/15N MinE-d10-CPMG, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
10	MinE-d10-RDC	[U-2H; U-15N]		1.0 mM
11	MinE-d10-CPMG	[U-2H; U-15N]		1.0 mM

12 HSQC IPAP

Instrument

Bruker AVANCE - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 bar, Temperature 298 K, pH 6.5, Details 1.0 mM U-2H/15N MinE-d10-RDC, 1.0 mM U-2H/15N MinE-d10-CPMG, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
10	MinE-d10-RDC	[U-2H; U-15N]		1.0 mM
11	MinE-d10-CPMG	[U-2H; U-15N]		1.0 mM

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr30661_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr30661_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	460		100.0 (chain: 1, length: 81)
1	Chemical shift references	chem_shift_reference_1	OK	3		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 81, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 147
  - ¹³C chemical shifts: 236
  - ¹⁵N chemical shifts: 77
- Completeness of assignments
  - Entity_assemble_ID: 1
- Peptide bond of PRO
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	508	147	28.9
¹³C chemical shifts	373	236	63.3
¹⁵N chemical shifts	95	77	81.1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	163	147	90.2
¹³C chemical shifts	162	158	97.5
¹⁵N chemical shifts	79	77	97.5

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	345	0	0.0
¹³C chemical shifts	211	78	37.0
¹⁵N chemical shifts	16	0	0.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	62	0	0.0
¹³C chemical shifts	62	5	8.1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	13	0	0.0
¹³C chemical shifts	13	0	0.0

Keywords CELL CYCLE, CELL DIVISION, MinD, MinE

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Found 1 Document (0.645 seconds)

BMRB: 30661

Sample #1

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Sample #3

Sample #4

Related entities 1. Cell division topological specificity factor, : 1 : 2 : 103 entities Detail

Interaction partners 1. Cell division topological specificity factor, : 1 interactors Detail

Experiments performed 12 experiments Detail

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Chemical shift validation 3 contents Detail